Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DXX82_RS02245 Genome accession   NZ_CP031477
Coordinates   478479..479090 (-) Length   203 a.a.
NCBI ID   WP_049380421.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M27794     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 473479..484090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXX82_RS02215 ybgE 473518..473805 (-) 288 WP_115912910.1 cyd operon protein YbgE -
  DXX82_RS02220 - 473808..473906 (-) 99 WP_111406655.1 cytochrome bd oxidase small subunit, CydX/CbdX family -
  DXX82_RS02225 cydB 473918..475057 (-) 1140 WP_111328417.1 cytochrome d ubiquinol oxidase subunit II -
  DXX82_RS02230 - 475072..476637 (-) 1566 WP_115911220.1 cytochrome ubiquinol oxidase subunit I -
  DXX82_RS02235 - 477091..477402 (+) 312 WP_115911222.1 DUF5339 domain-containing protein -
  DXX82_RS02240 ruvB 477458..478465 (-) 1008 WP_115911224.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  DXX82_RS02245 ruvA 478479..479090 (-) 612 WP_049380421.1 Holliday junction branch migration protein RuvA Machinery gene
  DXX82_RS02250 ruvC 479150..479722 (-) 573 WP_115911226.1 crossover junction endodeoxyribonuclease RuvC -
  DXX82_RS02255 - 479774..480208 (-) 435 WP_005697082.1 hypothetical protein -
  DXX82_RS02260 - 480226..480966 (-) 741 WP_115911228.1 YebC/PmpR family DNA-binding transcriptional regulator -
  DXX82_RS02265 nudB 481014..481472 (-) 459 WP_115911230.1 dihydroneopterin triphosphate diphosphatase -
  DXX82_RS02270 - 481580..482872 (-) 1293 WP_115911232.1 NRAMP family divalent metal transporter -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22482.24 Da        Isoelectric Point: 6.7418

>NTDB_id=265932 DXX82_RS02245 WP_049380421.1 478479..479090(-) (ruvA) [Haemophilus parainfluenzae strain M27794]
MIGRLKGILLEKQPPEILLDVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLVKIPGVGKKTAERLLVELKGKFKDVRQSDFFVESKHIPSTSELRQAESSA
DEAVAALVALGYKPTDAEKMVKKVAKADLSSEQLIREALKAAL

Nucleotide


Download         Length: 612 bp        

>NTDB_id=265932 DXX82_RS02245 WP_049380421.1 478479..479090(-) (ruvA) [Haemophilus parainfluenzae strain M27794]
ATGATCGGTCGTTTAAAAGGCATCTTATTAGAAAAACAACCTCCTGAAATTTTGCTTGATGTACAAGGCGTTGGTTACGA
ATTATTGTTACCGATGACCAGTTTTTATGACTTACCAGAAATCGGGCAAGAAACCACTTTATTTACCCATCTTGTTGTGC
GTGAAGATGCTCATCTTCTTTTTGGATTTGCCCAAAAAACTGACCGCACTTTATTCCGTGAATTAATTAAAACCAATGGC
GTTGGCCCTAAATTGGCACTTGCGATTTTATCTGCAATGTCAGTCGAGCAGTTTGCTTATGCAATTGAACGAGAAGAACT
ATCAAAATTAGTTAAAATTCCTGGTGTGGGCAAGAAAACGGCTGAACGTTTATTGGTAGAGTTAAAAGGGAAGTTTAAGG
ATGTTCGTCAAAGTGATTTCTTTGTTGAAAGCAAACATATTCCTTCAACTTCAGAATTACGCCAAGCTGAAAGCTCAGCA
GATGAAGCGGTTGCTGCATTGGTTGCGCTAGGCTATAAACCAACCGATGCTGAAAAAATGGTGAAAAAAGTGGCTAAAGC
GGATTTGAGCAGTGAGCAATTAATTCGCGAAGCTTTAAAAGCCGCATTATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA N terminal domain (RuvA_N)

(1-62)

RuvA, C-terminal domain (RuvA_C)

(160-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

37.441

100

0.389

Multiple sequence alignment