Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   C2I17_RS14610 Genome accession   NZ_CP026040
Coordinates   3050586..3052343 (+) Length   585 a.a.
NCBI ID   WP_249877599.1    Uniprot ID   -
Organism   Niallia circulans strain PK3_15     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 3045586..3057343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I17_RS14595 (C2I17_14455) - 3046860..3048194 (+) 1335 WP_171510135.1 sulfatase family protein -
  C2I17_RS14600 (C2I17_14460) - 3048643..3049707 (-) 1065 WP_249877597.1 M50 family metallopeptidase -
  C2I17_RS14605 (C2I17_14465) - 3049874..3050431 (+) 558 WP_249877598.1 thioredoxin family protein -
  C2I17_RS14610 (C2I17_14470) rcrP 3050586..3052343 (+) 1758 WP_249877599.1 ABC transporter ATP-binding protein Regulator
  C2I17_RS14615 (C2I17_14475) rcrQ 3052336..3054177 (+) 1842 WP_420916345.1 ABC transporter ATP-binding protein Regulator
  C2I17_RS14620 (C2I17_14480) - 3054255..3054758 (+) 504 WP_095332595.1 MarR family winged helix-turn-helix transcriptional regulator -
  C2I17_RS14625 (C2I17_14485) - 3055217..3056065 (-) 849 WP_176474237.1 MerR family transcriptional regulator -
  C2I17_RS14630 (C2I17_14490) - 3056086..3057249 (-) 1164 WP_095332598.1 MFS transporter -

Sequence


Protein


Download         Length: 585 a.a.        Molecular weight: 64948.81 Da        Isoelectric Point: 6.3874

>NTDB_id=265932 C2I17_RS14610 WP_249877599.1 3050586..3052343(+) (rcrP) [Niallia circulans strain PK3_15]
MINIFKNFQKKDWMFISCALVFIILQVWLDLKLPDYMSEITRLVQTEGSELSDVLTQGGFMMLCAIGSMVASIITVFFAA
KVAAGFSNRLRKKVFDKTLSFSMEELSGFSTASLITRSTNDIMQVQILIILSLQIVIKAPIIAVWGILKITGKSWEWTAA
TGVAIAVLLVLIATIVLVALPKFKVIQKLTDNLNMVTREHLNGIRVVHAYNAANYHEEKFEKANKELTDTNLFTSRIMAL
MMPTISLIMSGMTLAIYWIGAVLINNAAMADRLPIFSDMVVFSSYAMQIIMAFMMVSITFVLLPRAAVSIKRINEVLNTD
VKIKSGSKTNGDKVGEIEFRDVSFKYPGASDYILRNISFTASKGETVAIIGSTGSGKSTLLNLIPRFMEATEGEILVDGL
NVKNYKLEALRDKIGYVSQKAVMFSGSVSSNITFGEEDKDSVEQTKIQRAVEIAQGKDFIEKMDQQYEATISQGGTNLSG
GQKQRLSIARAIYKDPEVYLFDDSFSALDYKTDRVLRSKLKEEIHDATNIIVAQRIGTIKDADRILVLDKGEVVGMGTHD
ELMVTCDVYQEIALSQLSKEELEIG

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=265932 C2I17_RS14610 WP_249877599.1 3050586..3052343(+) (rcrP) [Niallia circulans strain PK3_15]
ATGATAAATATTTTTAAAAACTTTCAAAAAAAGGACTGGATGTTCATTTCATGTGCATTAGTCTTTATTATTTTACAAGT
ATGGCTTGATTTAAAGCTGCCAGATTATATGTCTGAAATCACAAGACTAGTGCAGACAGAGGGAAGTGAGTTAAGCGACG
TTTTAACTCAAGGCGGATTTATGATGCTTTGTGCGATCGGAAGTATGGTTGCTTCGATTATCACGGTTTTCTTTGCTGCG
AAAGTGGCCGCAGGCTTTTCGAATCGTCTGCGCAAAAAGGTTTTTGATAAGACATTATCTTTTTCGATGGAAGAGCTGTC
TGGTTTTTCAACAGCTAGCTTAATAACTCGTTCGACAAATGATATTATGCAAGTTCAAATACTGATTATATTAAGCTTAC
AAATTGTTATTAAAGCACCGATCATTGCCGTGTGGGGAATTTTAAAAATTACCGGGAAAAGCTGGGAGTGGACCGCTGCT
ACAGGCGTGGCGATTGCGGTGTTATTAGTGCTGATTGCTACGATTGTGCTAGTTGCTCTTCCAAAATTCAAAGTTATCCA
GAAGTTAACGGATAATCTTAACATGGTAACAAGAGAGCATTTAAACGGAATCCGGGTTGTTCATGCTTATAATGCAGCAA
ACTATCATGAGGAAAAATTTGAAAAAGCAAATAAGGAATTAACGGATACAAATTTATTCACTTCTCGAATCATGGCCCTG
ATGATGCCGACGATTTCCCTGATAATGTCGGGGATGACGCTTGCCATCTATTGGATTGGAGCAGTGTTAATCAATAATGC
GGCAATGGCAGACCGCTTGCCGATATTCTCAGACATGGTTGTCTTTTCTTCCTATGCGATGCAAATCATTATGGCGTTTA
TGATGGTTTCCATTACATTTGTTCTTCTTCCTCGTGCGGCAGTTTCGATTAAGAGAATAAACGAAGTCCTGAATACCGAT
GTGAAAATTAAGAGTGGTTCGAAAACAAATGGAGACAAAGTAGGAGAGATTGAATTTCGCGATGTGAGCTTTAAATACCC
TGGAGCGAGTGATTATATTCTCCGAAATATTAGCTTTACTGCTTCTAAAGGGGAGACTGTTGCGATTATTGGTTCTACTG
GGAGCGGAAAAAGTACTCTGTTGAACTTGATACCTCGCTTTATGGAAGCAACCGAGGGCGAAATTTTGGTAGATGGTCTA
AATGTGAAGAATTATAAGCTAGAAGCATTACGAGACAAAATTGGATATGTATCGCAAAAAGCAGTTATGTTCAGTGGCTC
TGTATCTTCCAACATTACGTTTGGAGAGGAAGATAAGGATTCAGTGGAACAGACAAAAATCCAACGAGCAGTGGAAATTG
CGCAAGGAAAAGACTTTATTGAAAAAATGGATCAGCAATATGAGGCGACGATTTCACAAGGTGGAACCAATCTTTCTGGT
GGACAGAAACAAAGATTATCGATTGCACGTGCCATTTATAAAGATCCAGAAGTCTATTTATTTGATGATTCTTTTTCCGC
GTTGGACTATAAAACAGATCGTGTCCTCCGCTCTAAACTGAAAGAAGAGATCCATGATGCCACTAATATTATTGTGGCAC
AGCGAATTGGAACGATTAAGGATGCTGACCGCATTCTGGTATTAGATAAAGGCGAAGTAGTTGGAATGGGTACACATGAC
GAATTAATGGTAACTTGCGATGTTTATCAAGAAATTGCTTTATCACAATTATCAAAGGAGGAACTCGAAATTGGCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

51.252

100

0.525


Multiple sequence alignment