Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   C2I17_RS14615 Genome accession   NZ_CP026040
Coordinates   3052336..3054177 (+) Length   613 a.a.
NCBI ID   WP_420916345.1    Uniprot ID   -
Organism   Niallia circulans strain PK3_15     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3047336..3059177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I17_RS14600 (C2I17_14460) - 3048643..3049707 (-) 1065 WP_249877597.1 M50 family metallopeptidase -
  C2I17_RS14605 (C2I17_14465) - 3049874..3050431 (+) 558 WP_249877598.1 thioredoxin family protein -
  C2I17_RS14610 (C2I17_14470) rcrP 3050586..3052343 (+) 1758 WP_249877599.1 ABC transporter ATP-binding protein Regulator
  C2I17_RS14615 (C2I17_14475) rcrQ 3052336..3054177 (+) 1842 WP_420916345.1 ABC transporter ATP-binding protein Regulator
  C2I17_RS14620 (C2I17_14480) - 3054255..3054758 (+) 504 WP_095332595.1 MarR family winged helix-turn-helix transcriptional regulator -
  C2I17_RS14625 (C2I17_14485) - 3055217..3056065 (-) 849 WP_176474237.1 MerR family transcriptional regulator -
  C2I17_RS14630 (C2I17_14490) - 3056086..3057249 (-) 1164 WP_095332598.1 MFS transporter -
  C2I17_RS14635 (C2I17_14495) - 3057427..3057996 (+) 570 WP_249877600.1 DUF6434 domain-containing protein -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 68089.94 Da        Isoelectric Point: 5.1790

>NTDB_id=265933 C2I17_RS14615 WP_420916345.1 3052336..3054177(+) (rcrQ) [Niallia circulans strain PK3_15]
MAKQNEVKEAKKPPQTEELGKKTAKSIPPRAKGMNFSSLKQLVIYCKAYFPIIIFALILAMTAAIFSIIGPDQLSKMTDY
ITAGLMGDIDLDAVYDVAILLVFLYGLGFIFNYVQGYIMATVTQRISKQLRRDISVKINRLPLKYFDNTTTGDVLSRVTN
DVDMVGQTMNQSISSLITAITMFVGSLIMMFYTNWIMAIAAILSTFIGFAFMFFIISKSQKYFAQQQQELGKLNGHIEEI
YSGHNVVKAYNAEQQAKDDFFAINTRLYESAWKSQFMSGLMMPLMMFIGNFGYVVVCIVGAALAVNGNISFGVIVAFMLY
IRLFTQPLQQIAQAATNLQSTAAASGRVFEFLSEEELAVEDEKTAKLANIKGDVEFKHVRFGYSEDKTIIEDFSVQVAAG
QKVAIVGPTGAGKTTLINLLMRFYEINGGEITIDGIPTNEMTREALHELFCMVLQDTWIFEGSIRDNIVYSREGVSDEEV
EAACKAAGLHHFIKTLPNGYDTILDDKTSLSAGQKQLITIARAMVKMAPLLILDEATSSVDTRTELLIQTAMDKLTEGKT
SFVIAHRLSTIKNADLILVMKDGDIIEAGTHKELIEKNGFYAELYNSQFEEAS

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=265933 C2I17_RS14615 WP_420916345.1 3052336..3054177(+) (rcrQ) [Niallia circulans strain PK3_15]
TTGGCTAAGCAAAACGAAGTAAAAGAAGCGAAAAAACCACCCCAAACTGAAGAGTTGGGGAAAAAAACAGCAAAATCGAT
TCCTCCGCGTGCAAAAGGGATGAATTTTTCCAGTTTAAAACAGCTGGTCATATACTGTAAGGCTTACTTTCCGATTATCA
TCTTTGCTTTAATTCTTGCGATGACAGCGGCAATCTTTAGCATTATCGGTCCTGATCAGCTAAGCAAAATGACGGATTAT
ATTACAGCAGGACTGATGGGAGACATTGATTTAGATGCTGTATATGATGTAGCGATTCTGTTGGTGTTCCTATACGGTTT
AGGCTTTATTTTTAACTATGTGCAAGGCTATATTATGGCAACTGTCACCCAGAGAATTTCAAAACAATTAAGAAGAGACA
TTTCGGTAAAAATTAATCGTCTGCCTTTAAAGTATTTTGATAATACAACAACAGGTGATGTCCTTAGCCGGGTTACAAAT
GATGTCGATATGGTGGGACAGACGATGAACCAAAGTATTAGCAGCTTAATTACGGCTATTACTATGTTCGTCGGTTCCTT
AATCATGATGTTCTACACCAACTGGATTATGGCAATTGCAGCTATTCTTTCCACCTTTATTGGTTTTGCGTTTATGTTCT
TTATTATTTCGAAATCACAGAAATACTTCGCTCAACAGCAGCAAGAGCTTGGAAAATTAAATGGTCATATTGAAGAAATC
TATTCTGGCCATAATGTCGTGAAAGCTTATAATGCAGAGCAGCAGGCGAAGGATGACTTTTTTGCTATCAATACACGATT
ATATGAGAGTGCGTGGAAATCGCAATTTATGTCAGGGCTGATGATGCCATTAATGATGTTTATTGGAAACTTTGGTTATG
TGGTTGTATGTATTGTCGGGGCAGCTCTTGCTGTAAATGGCAATATTTCATTTGGTGTTATTGTTGCCTTTATGCTGTAC
ATTCGCTTATTTACTCAGCCGCTGCAACAAATTGCGCAAGCAGCGACAAATCTGCAATCCACAGCAGCAGCAAGTGGGCG
TGTGTTTGAGTTCTTGTCCGAAGAAGAACTAGCAGTAGAGGATGAGAAAACAGCAAAATTAGCAAATATCAAAGGTGATG
TGGAATTTAAGCATGTCCGCTTTGGCTACAGCGAAGATAAAACGATTATTGAAGACTTTTCCGTACAAGTAGCCGCTGGC
CAGAAGGTCGCAATCGTAGGACCGACTGGCGCTGGAAAAACAACATTAATTAATTTGCTGATGCGCTTTTATGAAATAAA
TGGCGGCGAGATCACAATTGACGGGATTCCAACCAACGAAATGACAAGAGAGGCCCTGCATGAGCTTTTCTGTATGGTGC
TGCAAGATACATGGATATTTGAAGGGTCTATTCGCGACAATATCGTCTACTCAAGAGAAGGAGTATCAGATGAAGAGGTT
GAAGCTGCCTGCAAAGCAGCTGGCTTGCATCATTTTATCAAAACATTGCCAAACGGCTATGATACTATCTTGGATGACAA
AACAAGTTTATCAGCAGGTCAAAAACAGCTTATCACCATCGCACGTGCCATGGTAAAGATGGCGCCATTACTTATCCTAG
ATGAAGCGACTAGCTCCGTGGATACCCGTACGGAATTACTGATTCAAACAGCAATGGATAAGCTGACAGAAGGAAAAACT
TCCTTTGTGATCGCCCATAGACTTTCTACAATTAAAAATGCCGATTTAATACTTGTCATGAAAGACGGCGATATTATCGA
AGCCGGAACACATAAAGAATTAATCGAGAAAAATGGATTTTATGCTGAGCTTTATAATAGCCAGTTTGAAGAAGCATCGT
AA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(53-328)

ABC transporter (ABC_tran)

(391-538)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

58.435

93.801

0.548

Multiple sequence alignment