Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   C2H95_RS03130 Genome accession   NZ_CP026037
Coordinates   612939..614051 (+) Length   370 a.a.
NCBI ID   WP_249849582.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 607939..619051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H95_RS03105 (C2H95_03095) rnpA 608652..609002 (-) 351 WP_003242628.1 ribonuclease P protein component -
  C2H95_RS03110 (C2H95_03100) rpmH 609154..609288 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  C2H95_RS03115 (C2H95_03105) dnaA 609915..611255 (+) 1341 WP_003242674.1 chromosomal replication initiator protein DnaA -
  C2H95_RS03120 (C2H95_03110) dnaN 611441..612577 (+) 1137 WP_003242509.1 DNA polymerase III subunit beta -
  C2H95_RS03125 (C2H95_03115) rlbA 612708..612923 (+) 216 WP_003226810.1 ribosome maturation protein RlbA -
  C2H95_RS03130 (C2H95_03120) recF 612939..614051 (+) 1113 WP_249849582.1 DNA replication/repair protein RecF Machinery gene
  C2H95_RS03135 (C2H95_03125) remB 614069..614314 (+) 246 WP_003219266.1 extracellular matrix regulator RemB -
  C2H95_RS03140 (C2H95_03130) gyrB 614369..616285 (+) 1917 WP_003226808.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  C2H95_RS03145 (C2H95_03135) gyrA 616496..618961 (+) 2466 WP_003244540.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42327.38 Da        Isoelectric Point: 7.3979

>NTDB_id=265672 C2H95_RS03130 WP_249849582.1 612939..614051(+) (recF) [Bacillus subtilis strain PK5_17]
MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALDVSDPLELSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRHAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=265672 C2H95_RS03130 WP_249849582.1 612939..614051(+) (recF) [Bacillus subtilis strain PK5_17]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGACCATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATCGGAGAAAACGCCCAGGGGAAGACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACCGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCA
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATTATGTTCGCGCCGGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATCGGACAGGTTTCTCCCGTCTATCTTCATGATCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGG
AATCATTTTTTGAAACAGCTGCAAACAAGAAAACAAACTGACCGGACGATGCTCGATGTTCTGACCGATCAGCTTGTAGA
AGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCACAGCTCGAGAAATGGGCGCAGCCTATCCATGCAGGCA
TCTCAAGAGGGCTTGAAGAACTGACCCTGAAATACCATACAGCTCTTGATGTATCAGATCCTCTAGAGTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGTGGTGTGACGCTGTCAGGGCCTCATCG
CGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACGACGGCGTTGT
CCCTTAAGCTGGCGGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAACTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCATGCAGGAATGTTCCGTGTGCAAAATGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

99.459

100

0.995

Multiple sequence alignment