Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BS11774_RS18575 Genome accession   NZ_CP026010
Coordinates   3487413..3487769 (+) Length   118 a.a.
NCBI ID   WP_128474275.1    Uniprot ID   -
Organism   Bacillus subtilis strain ATCC 11774     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3482413..3492769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS11774_RS18555 (BS11774_18445) gcvT 3483006..3484094 (-) 1089 WP_015714248.1 glycine cleavage system aminomethyltransferase GcvT -
  BS11774_RS18560 (BS11774_18450) hepAA 3484535..3486208 (+) 1674 WP_128474055.1 SNF2-related protein -
  BS11774_RS18565 (BS11774_18455) yqhG 3486229..3487023 (+) 795 WP_015714249.1 YqhG family protein -
  BS11774_RS18570 (BS11774_18460) sinI 3487206..3487379 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  BS11774_RS18575 (BS11774_18465) sinR 3487413..3487769 (+) 357 WP_128474275.1 transcriptional regulator SinR Regulator
  BS11774_RS18580 (BS11774_18470) tasA 3487842..3488627 (-) 786 WP_128474056.1 biofilm matrix protein TasA -
  BS11774_RS18585 (BS11774_18475) sipW 3488691..3489263 (-) 573 WP_072692741.1 signal peptidase I SipW -
  BS11774_RS18590 (BS11774_18480) tapA 3489247..3490008 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  BS11774_RS18595 (BS11774_18485) yqzG 3490280..3490606 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  BS11774_RS18600 (BS11774_18490) spoIITA 3490648..3490827 (-) 180 WP_029726723.1 YqzE family protein -
  BS11774_RS18605 (BS11774_18495) comGG 3490899..3491273 (-) 375 WP_029317914.1 ComG operon protein ComGG Machinery gene
  BS11774_RS18610 (BS11774_18500) comGF 3491274..3491657 (-) 384 WP_029726721.1 ComG operon protein ComGF Machinery gene
  BS11774_RS18615 (BS11774_18505) comGE 3491683..3492030 (-) 348 WP_088272394.1 ComG operon protein 5 Machinery gene
  BS11774_RS18620 (BS11774_18510) comGD 3492014..3492445 (-) 432 WP_029726720.1 comG operon protein ComGD Machinery gene
  BS11774_RS18625 (BS11774_18515) comGC 3492435..3492731 (-) 297 WP_128474057.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 13848.63 Da        Isoelectric Point: 7.3162

>NTDB_id=265003 BS11774_RS18575 WP_128474275.1 3487413..3487769(+) (sinR) [Bacillus subtilis strain ATCC 11774]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEELVPEQRH

Nucleotide


Download         Length: 357 bp        

>NTDB_id=265003 BS11774_RS18575 WP_128474275.1 3487413..3487769(+) (sinR) [Bacillus subtilis strain ATCC 11774]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
ACAAAAAGAGGAGTTAGTGCCTGAGCAGAGGCACTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

94.068

0.941

Multiple sequence alignment