Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BCC_RS01820 Genome accession   NC_008513
Coordinates   380672..381217 (-) Length   181 a.a.
NCBI ID   WP_011672729.1    Uniprot ID   Q056Y9
Organism   Buchnera aphidicola BCc     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 375672..386217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCC_RS01790 (BCc_351) rpe 376327..376989 (-) 663 WP_011672724.1 ribulose-phosphate 3-epimerase -
  BCC_RS01795 (BCc_352) aroB 377098..378201 (-) 1104 WP_011672725.1 3-dehydroquinate synthase -
  BCC_RS01800 (BCc_353) aroK 378261..378794 (-) 534 WP_041749180.1 shikimate kinase AroK -
  BCC_RS01810 (BCc_355) - 379163..379744 (-) 582 WP_011672727.1 NfuA family Fe-S biogenesis protein -
  BCC_RS01815 (BCc_356) - 379835..380623 (+) 789 WP_011672728.1 alpha/beta fold hydrolase -
  BCC_RS01820 (BCc_357) ssb 380672..381217 (-) 546 WP_011672729.1 single-stranded DNA-binding protein Machinery gene
  BCC_RS01825 (BCc_358) dusA 381485..382465 (+) 981 WP_148209412.1 tRNA dihydrouridine(20/20a) synthase DusA -
  BCC_RS01830 (BCc_359) dnaB 382752..384125 (+) 1374 WP_011672731.1 replicative DNA helicase -
  BCC_RS01835 (BCc_360) ruvX 384482..384874 (+) 393 WP_011672732.1 Holliday junction resolvase RuvX -
  BCC_RS01840 (BCc_361) hemW 384953..386089 (+) 1137 WP_041749183.1 radical SAM family heme chaperone HemW -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20566.00 Da        Isoelectric Point: 9.1529

>NTDB_id=26490 BCC_RS01820 WP_011672729.1 380672..381217(-) (ssb) [Buchnera aphidicola BCc]
MASRGVNKVILIGYLGQDPDIRYMPNGGTVVNITLATSDTWKDKHTGENKEKTEWHRVVLFGKIAEISGQYLKKGSQVYI
EGSLQTRKWKDQNGLDRYTTEIVVSVTGSMQMLGSRNTNNSFKSSVKNSQDDFLNDKNTSRSIHKKKLSDDNLLKNEYQQ
QKSHLVDSTSKIDFDDEDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=26490 BCC_RS01820 WP_011672729.1 380672..381217(-) (ssb) [Buchnera aphidicola BCc]
ATGGCAAGTAGAGGTGTAAATAAAGTTATTTTAATTGGTTATTTAGGGCAGGATCCTGATATACGGTATATGCCTAATGG
TGGTACTGTAGTTAATATTACTTTAGCTACGTCAGATACATGGAAAGATAAACATACGGGTGAAAATAAAGAAAAAACCG
AATGGCATCGAGTTGTTTTATTTGGTAAAATTGCTGAAATTTCCGGTCAATATTTAAAAAAAGGCTCACAAGTTTATATA
GAAGGATCATTACAAACACGTAAATGGAAAGATCAAAATGGATTAGATCGTTATACTACGGAGATAGTGGTTAGTGTTAC
TGGTTCTATGCAAATGTTAGGATCTCGTAATACTAATAATTCTTTTAAATCTTCAGTTAAAAATTCTCAAGATGATTTTT
TAAATGATAAAAATACATCTAGAAGTATACATAAAAAAAAATTGTCTGATGATAATTTATTAAAAAATGAATATCAACAA
CAAAAATCTCATTTAGTAGATTCTACATCTAAAATTGATTTTGATGATGAAGATATTCCTTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q056Y9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.301

100

0.558
  ssb Glaesserella parasuis strain SC1401

44.865

100

0.459
  ssb Neisseria meningitidis MC58

40.223

98.895

0.398
  ssb Neisseria gonorrhoeae MS11

40.223

98.895

0.398

Multiple sequence alignment