Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   SPYM_RS04875 Genome accession   NC_009332
Coordinates   953812..954492 (-) Length   226 a.a.
NCBI ID   WP_002984709.1    Uniprot ID   A2REK0
Organism   Streptococcus pyogenes str. Manfredo     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 948812..959492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPYM_RS04845 (SpyM50942) - 949050..949628 (+) 579 WP_002984698.1 CYTH domain-containing protein -
  SPYM_RS04850 (SpyM50943) - 949768..950748 (+) 981 WP_002989827.1 ribose-phosphate diphosphokinase -
  SPYM_RS04855 (SpyM50944) - 950745..951872 (+) 1128 WP_011888888.1 cysteine desulfurase family protein -
  SPYM_RS04860 (SpyM50945) - 951862..952209 (+) 348 WP_002989831.1 DUF1831 domain-containing protein -
  SPYM_RS04865 (SpyM50946) - 952461..953105 (+) 645 WP_002984705.1 redox-sensing transcriptional repressor Rex -
  SPYM_RS04870 (SpyM50947) - 953115..953810 (+) 696 WP_002989835.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  SPYM_RS04875 (SpyM50948) radC 953812..954492 (-) 681 WP_002984709.1 RadC family protein Machinery gene
  SPYM_RS04880 (SpyM50949) - 954541..955668 (-) 1128 WP_032463878.1 AI-2E family transporter -
  SPYM_RS04885 (SpyM50951) - 955848..956462 (-) 615 WP_011017748.1 SGNH/GDSL hydrolase family protein -
  SPYM_RS04890 (SpyM50952) - 956625..958157 (-) 1533 WP_011888889.1 ClC family H(+)/Cl(-) exchange transporter -
  SPYM_RS04895 (SpyM50953) aphA 958335..959066 (-) 732 WP_011888890.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25742.96 Da        Isoelectric Point: 7.3866

>NTDB_id=26489 SPYM_RS04875 WP_002984709.1 953812..954492(-) (radC) [Streptococcus pyogenes str. Manfredo]
MYSIKCDDNKAMPRERLMRLGAESLSNQELLAILLRTGNKEKHVLELSSYLLSHLDSLADFKKMSLQELQHLAGIGKVKA
IEIKAMIELVSRILATDKTLTDSVLTSVQVAEKMMAALGDKKQEHLVVLYLDNQNRIIEEKTIFIGTVRRSLAEPREILY
YACKNMATSLIVIHNHPSGNIEPSSNDYCFTEKIKRSCEDLGIICLDHIIVSYKDYYSFREKSTLF

Nucleotide


Download         Length: 681 bp        

>NTDB_id=26489 SPYM_RS04875 WP_002984709.1 953812..954492(-) (radC) [Streptococcus pyogenes str. Manfredo]
ATGTATTCTATAAAATGTGATGATAATAAAGCCATGCCAAGAGAACGTTTGATGCGACTAGGAGCAGAGTCTCTAAGTAA
TCAAGAATTATTAGCAATTTTATTACGAACAGGTAATAAAGAAAAGCATGTCTTAGAGCTGTCATCCTATCTTTTATCGC
ATTTAGACAGTCTGGCAGATTTTAAAAAGATGTCTTTGCAAGAATTACAACATTTGGCAGGTATAGGAAAAGTTAAAGCG
ATTGAAATTAAAGCTATGATTGAGTTGGTTTCCCGAATTTTAGCGACCGATAAGACATTAACTGATAGCGTATTAACCAG
TGTTCAGGTCGCTGAAAAAATGATGGCAGCTTTAGGAGATAAAAAACAAGAGCATTTAGTCGTATTGTATTTAGATAATC
AAAATCGTATTATTGAAGAAAAAACTATTTTTATTGGGACTGTCCGACGTTCACTTGCAGAACCAAGAGAAATTTTATAC
TATGCCTGTAAAAATATGGCGACTAGTCTTATTGTTATCCATAATCATCCTTCAGGAAATATTGAACCTAGTTCTAACGA
TTATTGCTTTACTGAAAAAATAAAACGATCATGTGAAGATTTAGGCATTATCTGTCTAGATCACATTATCGTTAGCTATA
AAGATTATTATAGTTTTCGAGAAAAATCAACCCTTTTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(107-222)

UPF0758 N-terminal (UPF0758_N)

(10-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A2REK0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

57.965

100

0.58
  radC Streptococcus pneumoniae R6

57.522

100

0.575
  radC Streptococcus pneumoniae D39

57.522

100

0.575
  radC Streptococcus gordonii str. Challis substr. CH1

55.752

100

0.558
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

43.119

96.46

0.416
  radC Haemophilus influenzae Rd KW20

37.9

96.903

0.367

Multiple sequence alignment