Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   DV166_RS07355 Genome accession   NZ_CP031334
Coordinates   1253738..1254019 (+) Length   93 a.a.
NCBI ID   WP_002214428.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22293     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1248738..1259019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV166_RS07315 - 1249701..1250135 (+) 435 WP_010980984.1 hypothetical protein -
  DV166_RS07320 - 1250203..1250421 (-) 219 Protein_1161 IS30 family transposase -
  DV166_RS13840 - 1250471..1250644 (+) 174 WP_153957336.1 hypothetical protein -
  DV166_RS07325 - 1250647..1251585 (+) 939 WP_080542360.1 immunity 49 family protein -
  DV166_RS13845 - 1252300..1252503 (+) 204 WP_002261355.1 hypothetical protein -
  DV166_RS07345 - 1253068..1253526 (+) 459 WP_002214429.1 hypothetical protein -
  DV166_RS07350 - 1253525..1253659 (+) 135 Protein_1166 IS1595 family transposase -
  DV166_RS07355 comA 1253738..1254019 (+) 282 WP_002214428.1 ATP-binding cassette domain-containing protein Regulator
  DV166_RS07360 - 1254040..1255266 (-) 1227 WP_021439291.1 YihY family inner membrane protein -
  DV166_RS14795 - 1255421..1255626 (+) 206 Protein_1169 NAD(P)H-quinone oxidoreductase -
  DV166_RS07370 queC 1255763..1256422 (+) 660 WP_002231842.1 7-cyano-7-deazaguanine synthase QueC -
  DV166_RS07375 - 1256450..1256968 (+) 519 WP_002214425.1 DUF1543 domain-containing protein -
  DV166_RS07380 queD 1256975..1257397 (+) 423 WP_002214424.1 6-carboxytetrahydropterin synthase QueD -
  DV166_RS07385 - 1257666..1258037 (+) 372 WP_115437046.1 DUF1304 domain-containing protein -
  DV166_RS07390 - 1258034..1258672 (+) 639 WP_115437047.1 7-carboxy-7-deazaguanine synthase QueE -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10070.73 Da        Isoelectric Point: 6.7158

>NTDB_id=264686 DV166_RS07355 WP_002214428.1 1253738..1254019(+) (comA) [Neisseria meningitidis strain M22293]
MIHEEISAMPMGYETLIGDMGSALSGGQKQRIVLARALYCEPKILFLDAATSHLDIANEKAVNANLNGLSIIKIMAAHRK
ETVESADRKMSLG

Nucleotide


Download         Length: 282 bp        

>NTDB_id=264686 DV166_RS07355 WP_002214428.1 1253738..1254019(+) (comA) [Neisseria meningitidis strain M22293]
ATGATTCACGAAGAAATCTCCGCCATGCCTATGGGCTATGAAACCTTGATCGGCGATATGGGCAGCGCACTGTCAGGCGG
ACAAAAACAACGCATCGTATTGGCGCGGGCCTTATATTGCGAACCGAAAATCCTATTTTTAGATGCAGCGACCAGCCATT
TGGATATTGCCAATGAAAAAGCAGTCAATGCAAACTTGAATGGCTTGTCTATCATAAAAATTATGGCGGCACACAGAAAG
GAAACGGTGGAATCAGCAGATAGGAAAATGTCTTTAGGATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(14-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

45.055

97.849

0.441
  comA/nlmT Streptococcus mutans UA159

45.977

93.548

0.43
  comA Streptococcus pneumoniae Rx1

43.956

97.849

0.43
  comA Streptococcus pneumoniae D39

43.956

97.849

0.43
  comA Streptococcus pneumoniae R6

43.956

97.849

0.43
  comA Streptococcus pneumoniae TIGR4

43.956

97.849

0.43
  comA Streptococcus mitis NCTC 12261

43.956

97.849

0.43
  comA Streptococcus gordonii str. Challis substr. CH1

42.857

97.849

0.419

Multiple sequence alignment