Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   DV143_RS04050 Genome accession   NZ_CP031333
Coordinates   684958..685419 (+) Length   153 a.a.
NCBI ID   WP_114935515.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M18727     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 679958..690419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV143_RS04020 - 681104..681313 (-) 210 WP_002212949.1 4-oxalocrotonate tautomerase family protein -
  DV143_RS04025 - 681658..682464 (+) 807 WP_002225093.1 DUF4198 domain-containing protein -
  DV143_RS04030 - 682522..683787 (-) 1266 WP_115435247.1 Glu/Leu/Phe/Val dehydrogenase -
  DV143_RS04045 - 684194..684901 (+) 708 WP_115435248.1 phosphoglycolate phosphatase -
  DV143_RS04050 recX 684958..685419 (+) 462 WP_114935515.1 recombination regulator RecX Regulator
  DV143_RS14020 - 685493..685654 (+) 162 WP_003714510.1 hypothetical protein -
  DV143_RS04065 - 685807..686289 (+) 483 WP_002234057.1 acyl-CoA thioesterase -
  DV143_RS04070 - 686650..687897 (-) 1248 WP_014581407.1 M23 family metallopeptidase -
  DV143_RS04075 surE 688153..688899 (-) 747 WP_014581406.1 5'/3'-nucleotidase SurE -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17867.26 Da        Isoelectric Point: 9.8430

>NTDB_id=264605 DV143_RS04050 WP_114935515.1 684958..685419(+) (recX) [Neisseria meningitidis strain M18727]
MKPQKSLRARAMDILSRQEVSRLGLKRKLAPHAESEEELENVLNEFAERNWQSDLRYAEAYIRSKSRKHGLLRLKQALAQ
QGIDEETSYKLLPDRSSEKQTAMDVLRKKFKQPAADLKEKQKQARFLAYRGFDADTVQTALKRAWDDGWEEDC

Nucleotide


Download         Length: 462 bp        

>NTDB_id=264605 DV143_RS04050 WP_114935515.1 684958..685419(+) (recX) [Neisseria meningitidis strain M18727]
ATGAAACCCCAAAAATCACTCCGCGCCCGCGCGATGGACATCCTCTCGCGCCAAGAAGTCAGCCGCCTCGGTCTGAAGCG
CAAACTTGCACCGCACGCCGAAAGCGAAGAGGAGTTGGAAAACGTGTTAAACGAATTTGCCGAACGCAACTGGCAGTCGG
ATTTGCGCTATGCCGAAGCCTATATCCGCAGCAAAAGCCGCAAACACGGTTTATTGAGGCTGAAACAGGCTTTGGCGCAA
CAGGGCATAGATGAAGAGACAAGCTACAAGCTGCTTCCGGACAGGTCGAGCGAAAAACAGACCGCCATGGACGTGTTGCG
TAAAAAATTCAAACAGCCCGCCGCCGACCTTAAAGAAAAACAAAAACAGGCACGCTTCCTCGCCTATCGCGGTTTTGATG
CCGATACCGTTCAGACGGCATTGAAACGCGCTTGGGATGACGGCTGGGAGGAAGACTGCTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(30-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Neisseria gonorrhoeae strain FA1090

90.196

100

0.902

Multiple sequence alignment