Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   DV163_RS05870 Genome accession   NZ_CP031330
Coordinates   980033..980314 (-) Length   93 a.a.
NCBI ID   WP_002244020.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M21955     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 975033..985314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV163_RS05835 - 975332..975970 (-) 639 WP_002225593.1 7-carboxy-7-deazaguanine synthase QueE -
  DV163_RS05840 - 975967..976338 (-) 372 WP_002225594.1 DUF1304 domain-containing protein -
  DV163_RS05845 queD 976607..977029 (-) 423 WP_002225595.1 6-carboxytetrahydropterin synthase QueD -
  DV163_RS05850 - 977036..977554 (-) 519 WP_002225596.1 DUF1543 domain-containing protein -
  DV163_RS05855 queC 977582..978241 (-) 660 WP_002225597.1 7-cyano-7-deazaguanine synthase QueC -
  DV163_RS13940 - 978445..978631 (-) 187 Protein_977 NAD(P)H-quinone oxidoreductase -
  DV163_RS05865 - 978786..980012 (+) 1227 WP_002217875.1 YihY family inner membrane protein -
  DV163_RS05870 comA 980033..980314 (-) 282 WP_002244020.1 ATP-binding cassette domain-containing protein Regulator
  DV163_RS05875 - 980393..980527 (-) 135 Protein_980 IS1595 family transposase -
  DV163_RS05880 - 980526..980984 (-) 459 WP_002222917.1 hypothetical protein -
  DV163_RS13375 - 981548..981751 (-) 204 WP_033908561.1 hypothetical protein -
  DV163_RS05895 - 982500..983435 (-) 936 WP_115437299.1 immunity 49 family protein -
  DV163_RS05900 - 983438..984058 (-) 621 WP_009345692.1 hypothetical protein -
  DV163_RS05905 - 984181..984582 (-) 402 WP_002238290.1 DUF596 domain-containing protein -
  DV163_RS05910 - 984619..985041 (-) 423 WP_002222922.1 hypothetical protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10128.76 Da        Isoelectric Point: 6.2166

>NTDB_id=264472 DV163_RS05870 WP_002244020.1 980033..980314(-) (comA) [Neisseria meningitidis strain M21955]
MIHEEISAMPMGYETLIGDMGSALSGGQKQRIVLARALYCEPKILFLDEATSHLDIANEKAVNANLNGLSIIKIMAAHRK
ETVESADRKMSLG

Nucleotide


Download         Length: 282 bp        

>NTDB_id=264472 DV163_RS05870 WP_002244020.1 980033..980314(-) (comA) [Neisseria meningitidis strain M21955]
ATGATTCACGAAGAAATCTCCGCCATGCCTATGGGCTATGAAACCTTAATCGGCGATATGGGCAGCGCACTGTCAGGCGG
ACAAAAACAACGCATCGTATTGGCGCGGGCCTTATATTGCGAACCGAAAATCCTATTTTTAGATGAAGCGACCAGCCATT
TGGATATTGCCAATGAAAAAGCAGTCAATGCAAACTTGAATGGCTTGTCTATCATAAAAATTATGGCGGCACACAGAAAG
GAAACGGTGGAATCAGCAGATAGGAAAATGTCTTTAGGATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(14-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

46.154

97.849

0.452
  comA Streptococcus mitis NCTC 12261

45.055

97.849

0.441
  comA Streptococcus pneumoniae Rx1

45.055

97.849

0.441
  comA Streptococcus pneumoniae D39

45.055

97.849

0.441
  comA Streptococcus pneumoniae TIGR4

45.055

97.849

0.441
  comA Streptococcus pneumoniae R6

45.055

97.849

0.441
  comA/nlmT Streptococcus mutans UA159

47.126

93.548

0.441
  comA Streptococcus gordonii str. Challis substr. CH1

43.956

97.849

0.43