Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   DV167_RS07340 Genome accession   NZ_CP031329
Coordinates   1246791..1247072 (-) Length   93 a.a.
NCBI ID   WP_002214428.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22425     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1241791..1252072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV167_RS07305 - 1242090..1242728 (-) 639 WP_002242349.1 7-carboxy-7-deazaguanine synthase QueE -
  DV167_RS07310 - 1242725..1243096 (-) 372 WP_002222911.1 DUF1304 domain-containing protein -
  DV167_RS07315 queD 1243365..1243787 (-) 423 WP_002242354.1 6-carboxytetrahydropterin synthase QueD -
  DV167_RS07320 - 1243794..1244312 (-) 519 WP_002241180.1 DUF1543 domain-containing protein -
  DV167_RS07325 queC 1244340..1244999 (-) 660 WP_002242372.1 7-cyano-7-deazaguanine synthase QueC -
  DV167_RS13960 - 1245203..1245389 (-) 187 Protein_1207 NAD(P)H-quinone oxidoreductase -
  DV167_RS07335 - 1245544..1246764 (+) 1221 WP_002237729.1 YihY family inner membrane protein -
  DV167_RS07340 comA 1246791..1247072 (-) 282 WP_002214428.1 ATP-binding cassette domain-containing protein Regulator
  DV167_RS07345 - 1247151..1247285 (-) 135 Protein_1210 IS1595 family transposase -
  DV167_RS07350 - 1247284..1247742 (-) 459 WP_002214429.1 hypothetical protein -
  DV167_RS13355 - 1248306..1248509 (-) 204 WP_010980812.1 hypothetical protein -
  DV167_RS07370 - 1249257..1250192 (-) 936 WP_002242353.1 immunity 49 family protein -
  DV167_RS13360 - 1250195..1250368 (-) 174 WP_157795705.1 hypothetical protein -
  DV167_RS07375 - 1250367..1250635 (+) 269 Protein_1215 IS30 family transposase -
  DV167_RS07380 - 1250703..1251137 (-) 435 WP_010980984.1 hypothetical protein -
  DV167_RS07385 - 1251134..1251799 (-) 666 WP_033911952.1 hypothetical protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10070.73 Da        Isoelectric Point: 6.7158

>NTDB_id=264407 DV167_RS07340 WP_002214428.1 1246791..1247072(-) (comA) [Neisseria meningitidis strain M22425]
MIHEEISAMPMGYETLIGDMGSALSGGQKQRIVLARALYCEPKILFLDAATSHLDIANEKAVNANLNGLSIIKIMAAHRK
ETVESADRKMSLG

Nucleotide


Download         Length: 282 bp        

>NTDB_id=264407 DV167_RS07340 WP_002214428.1 1246791..1247072(-) (comA) [Neisseria meningitidis strain M22425]
ATGATTCACGAAGAAATCTCCGCCATGCCTATGGGCTATGAAACCTTGATCGGCGATATGGGCAGCGCACTGTCAGGCGG
ACAAAAACAACGCATCGTATTGGCGCGGGCCTTATATTGCGAACCGAAAATCCTATTTTTAGATGCAGCGACCAGCCATT
TGGATATTGCCAATGAAAAAGCAGTCAATGCAAACTTGAATGGCTTGTCTATCATAAAAATTATGGCGGCACACAGAAAG
GAAACGGTGGAATCAGCAGATAGGAAAATGTCTTTAGGATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(14-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

45.055

97.849

0.441
  comA/nlmT Streptococcus mutans UA159

45.977

93.548

0.43
  comA Streptococcus pneumoniae Rx1

43.956

97.849

0.43
  comA Streptococcus pneumoniae D39

43.956

97.849

0.43
  comA Streptococcus pneumoniae R6

43.956

97.849

0.43
  comA Streptococcus pneumoniae TIGR4

43.956

97.849

0.43
  comA Streptococcus mitis NCTC 12261

43.956

97.849

0.43
  comA Streptococcus gordonii str. Challis substr. CH1

42.857

97.849

0.419

Multiple sequence alignment