Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   DV144_RS12425 Genome accession   NZ_CP031328
Coordinates   2082058..2082339 (-) Length   93 a.a.
NCBI ID   WP_002241177.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M18755     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 2077058..2087339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV144_RS12390 - 2077357..2077995 (-) 639 WP_002229101.1 7-carboxy-7-deazaguanine synthase QueE -
  DV144_RS12395 - 2077992..2078363 (-) 372 WP_025459419.1 DUF1304 domain-containing protein -
  DV144_RS12400 queD 2078632..2079054 (-) 423 WP_002214424.1 6-carboxytetrahydropterin synthase QueD -
  DV144_RS12405 - 2079061..2079579 (-) 519 WP_025459420.1 DUF1543 domain-containing protein -
  DV144_RS12410 queC 2079607..2080266 (-) 660 WP_002231842.1 7-cyano-7-deazaguanine synthase QueC -
  DV144_RS14185 - 2080470..2080656 (-) 187 Protein_2032 NAD(P)H-quinone oxidoreductase -
  DV144_RS12420 - 2080811..2082037 (+) 1227 WP_002241178.1 YihY family inner membrane protein -
  DV144_RS12425 comA 2082058..2082339 (-) 282 WP_002241177.1 ATP-binding cassette domain-containing protein Regulator
  DV144_RS12430 - 2082418..2082552 (-) 135 Protein_2035 IS1595 family transposase -
  DV144_RS12435 - 2082551..2083009 (-) 459 WP_002214429.1 hypothetical protein -
  DV144_RS13620 - 2083573..2083776 (-) 204 WP_002261355.1 hypothetical protein -
  DV144_RS12455 - 2084340..2085275 (-) 936 WP_002236741.1 immunity 49 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10098.78 Da        Isoelectric Point: 6.7158

>NTDB_id=264359 DV144_RS12425 WP_002241177.1 2082058..2082339(-) (comA) [Neisseria meningitidis strain M18755]
MIHEEISAMPMGYETLIGDMGSALSGGQKQRIVLARALYCEPKILFLDAVTSHLDIANEKAVNANLNGLSIIKIMAAHRK
ETVESADRKMSLG

Nucleotide


Download         Length: 282 bp        

>NTDB_id=264359 DV144_RS12425 WP_002241177.1 2082058..2082339(-) (comA) [Neisseria meningitidis strain M18755]
ATGATTCACGAAGAAATCTCCGCCATGCCTATGGGCTATGAAACCTTGATCGGCGATATGGGCAGCGCACTGTCAGGCGG
ACAAAAACAACGCATCGTATTGGCGCGGGCCTTATATTGCGAACCGAAAATCCTATTTTTAGATGCAGTGACCAGCCATT
TGGATATTGCCAATGAAAAAGCAGTCAATGCAAACTTGAATGGCTTGTCTATCATAAAAATTATGGCGGCACACAGAAAG
GAAACGGTGGAATCAGCAGATAGGAAAATGTCTTTAGGATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(14-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

43.956

97.849

0.43
  comA/nlmT Streptococcus mutans UA159

44.828

93.548

0.419
  comA Streptococcus pneumoniae Rx1

42.857

97.849

0.419
  comA Streptococcus pneumoniae D39

42.857

97.849

0.419
  comA Streptococcus pneumoniae R6

42.857

97.849

0.419
  comA Streptococcus pneumoniae TIGR4

42.857

97.849

0.419
  comA Streptococcus mitis NCTC 12261

42.857

97.849

0.419
  comA Streptococcus gordonii str. Challis substr. CH1

41.758

97.849

0.409