Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C1S76_RS13140 Genome accession   NZ_CP025796
Coordinates   2758788..2759324 (+) Length   178 a.a.
NCBI ID   WP_045411465.1    Uniprot ID   -
Organism   Vibrio owensii strain 051011B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2753788..2764324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S76_RS13125 uvrA 2753854..2756676 (-) 2823 WP_045411459.1 excinuclease ABC subunit UvrA -
  C1S76_RS13130 galU 2756815..2757687 (-) 873 WP_038864585.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  C1S76_RS13135 qstR 2757850..2758494 (-) 645 WP_045411462.1 LuxR C-terminal-related transcriptional regulator Regulator
  C1S76_RS13140 ssb 2758788..2759324 (+) 537 WP_045411465.1 single-stranded DNA-binding protein Machinery gene
  C1S76_RS13145 csrD 2759572..2761581 (+) 2010 WP_020195913.1 RNase E specificity factor CsrD -
  C1S76_RS13150 - 2761593..2763041 (+) 1449 WP_041060962.1 MSHA biogenesis protein MshI -
  C1S76_RS13155 gspM 2763038..2763688 (+) 651 WP_045411472.1 type II secretion system protein GspM -
  C1S76_RS13160 - 2763681..2764010 (+) 330 WP_045411475.1 hypothetical protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19760.81 Da        Isoelectric Point: 4.9269

>NTDB_id=263891 C1S76_RS13140 WP_045411465.1 2758788..2759324(+) (ssb) [Vibrio owensii strain 051011B]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKGTGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQPQQQQQGGWGQPQQPAQQQYNAPQQQQQAPQQ
PQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=263891 C1S76_RS13140 WP_045411465.1 2758788..2759324(+) (ssb) [Vibrio owensii strain 051011B]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACAATTGCAACTTCTGAGTCATGGCGTGACAAAGGGACTGGCGAACAGCGTGAGAAAACAG
AATGGCACCGTGTTGTGTTATTCGGCAAACTTGCTGAAGTAGCAGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGCCAGCTTCAAACTCGTAAATGGCAAGACCAAAGTGGTCAAGACCGTTACTCAACAGAAGTTGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGTGGTCGTGCTCAAGGTGGCGCACCTATGGGCGGTGGTCAGCCACAACAGCAACAAC
AAGGTGGTTGGGGTCAGCCTCAACAGCCAGCTCAGCAGCAATACAATGCTCCTCAGCAACAACAACAGGCTCCGCAGCAA
CCACAGCAGCAATACAACGAGCCACCAATGGACTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.888

100

0.803
  ssb Glaesserella parasuis strain SC1401

56.545

100

0.607
  ssb Neisseria meningitidis MC58

48.333

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.333

100

0.489

Multiple sequence alignment