Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   C1S76_RS13135 Genome accession   NZ_CP025796
Coordinates   2757850..2758494 (-) Length   214 a.a.
NCBI ID   WP_045411462.1    Uniprot ID   -
Organism   Vibrio owensii strain 051011B     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2752850..2763494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S76_RS13125 uvrA 2753854..2756676 (-) 2823 WP_045411459.1 excinuclease ABC subunit UvrA -
  C1S76_RS13130 galU 2756815..2757687 (-) 873 WP_038864585.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  C1S76_RS13135 qstR 2757850..2758494 (-) 645 WP_045411462.1 LuxR C-terminal-related transcriptional regulator Regulator
  C1S76_RS13140 ssb 2758788..2759324 (+) 537 WP_045411465.1 single-stranded DNA-binding protein Machinery gene
  C1S76_RS13145 csrD 2759572..2761581 (+) 2010 WP_020195913.1 RNase E specificity factor CsrD -
  C1S76_RS13150 - 2761593..2763041 (+) 1449 WP_041060962.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24520.45 Da        Isoelectric Point: 9.5077

>NTDB_id=263890 C1S76_RS13135 WP_045411462.1 2757850..2758494(-) (qstR) [Vibrio owensii strain 051011B]
MKKSAYARKLFLISMEDGAAKKVEALEKYTDINIPVISTQALMEANPKHRNKILLIDFSEHKELVQSIKNLPLIWKNFET
VVFNVPKRLTTDELLIFGQLKGIFYQDSSLEQIGEGLKEIVNGQNWLPRNVTSQLLHYYRNVISTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=263890 C1S76_RS13135 WP_045411462.1 2757850..2758494(-) (qstR) [Vibrio owensii strain 051011B]
GTGAAAAAATCGGCTTATGCGAGAAAACTTTTTCTGATCAGCATGGAAGATGGTGCAGCGAAAAAGGTCGAAGCTCTGGA
AAAATACACTGACATCAACATCCCTGTCATTTCGACTCAAGCTTTGATGGAAGCCAACCCGAAACACCGCAATAAAATCT
TGTTGATCGACTTTAGTGAACATAAAGAACTGGTTCAATCGATCAAAAATCTGCCGTTGATCTGGAAAAATTTTGAAACC
GTGGTGTTCAATGTGCCTAAGCGTTTGACTACGGATGAATTGCTGATATTTGGGCAATTGAAAGGCATTTTCTACCAAGA
TAGTTCTTTAGAACAAATTGGGGAGGGTTTAAAAGAGATCGTAAACGGTCAGAACTGGTTACCTCGCAATGTGACTAGCC
AACTCCTGCATTATTATCGCAATGTCATCAGTACCCACACAGCGCCAGCCACCGTCGATTTGACCATTCGTGAGCTGCAA
GTCTTACGCTGCCTTCAAGCGGGGGCATCGAACAATCAAATGGCGGAAGAGTTGTTCGTTAGTGAGTTCACCATCAAGTC
ACACCTGTATCAAATTTTTAAGAAGCTCTCGGTAAAAAACCGCGTACAAGCCATTGCTTGGGCTGACCAAAATCTGATGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

95.794

100

0.958
  qstR Vibrio parahaemolyticus RIMD 2210633

89.72

100

0.897
  qstR Vibrio cholerae strain A1552

52.336

100

0.523

Multiple sequence alignment