Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C1S74_RS12870 Genome accession   NZ_CP025794
Coordinates   2607511..2608053 (+) Length   180 a.a.
NCBI ID   WP_038864580.1    Uniprot ID   A0A2N7N1Z9
Organism   Vibrio hyugaensis strain 090810a     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2602511..2613053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S74_RS12855 uvrA 2602591..2605413 (-) 2823 WP_045400481.1 excinuclease ABC subunit UvrA -
  C1S74_RS12860 galU 2605551..2606423 (-) 873 WP_045400482.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  C1S74_RS12865 qstR 2606586..2607230 (-) 645 WP_045400483.1 LuxR C-terminal-related transcriptional regulator Regulator
  C1S74_RS12870 ssb 2607511..2608053 (+) 543 WP_038864580.1 single-stranded DNA-binding protein Machinery gene
  C1S74_RS12875 csrD 2608304..2610313 (+) 2010 WP_045400486.1 RNase E specificity factor CsrD -
  C1S74_RS12880 - 2610325..2611779 (+) 1455 WP_045400487.1 MSHA biogenesis protein MshI -
  C1S74_RS12885 gspM 2611776..2612426 (+) 651 WP_045400489.1 type II secretion system protein GspM -
  C1S74_RS12890 - 2612419..2612751 (+) 333 WP_045400491.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20088.15 Da        Isoelectric Point: 4.9269

>NTDB_id=263844 C1S74_RS12870 WP_038864580.1 2607511..2608053(+) (ssb) [Vibrio hyugaensis strain 090810a]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPMGGQQQQQQGGWGQPQQPAQQQYNAPQQQQQPQQQAP
QQPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=263844 C1S74_RS12870 WP_038864580.1 2607511..2608053(+) (ssb) [Vibrio hyugaensis strain 090810a]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTTGCAAACATTACGATTGCGACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AGTGGCACCGTGTTGCACTATTCGGCAAGCTGGCTGAAGTAGCAGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGATCAAAGTGGTCAAGACCGTTACACAACTGAAGTGGTTGTTCAGGGCTT
CAACGGTGTAATGCAAATGCTAGGCGGTCGTGCTCAAGGTGGCGCTCCTATGGGTGGTCAACAGCAGCAACAGCAAGGCG
GTTGGGGTCAGCCTCAACAACCAGCTCAGCAGCAGTACAACGCTCCACAGCAACAGCAGCAACCTCAACAACAGGCTCCG
CAGCAACCACAGCAGCAATACAACGAGCCACCAATGGACTTCGACGACGACATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7N1Z9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

78.689

100

0.8
  ssb Glaesserella parasuis strain SC1401

55.838

100

0.611
  ssb Neisseria meningitidis MC58

45.745

100

0.478
  ssb Neisseria gonorrhoeae MS11

46.667

100

0.467

Multiple sequence alignment