Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   C1S74_RS12865 Genome accession   NZ_CP025794
Coordinates   2606586..2607230 (-) Length   214 a.a.
NCBI ID   WP_045400483.1    Uniprot ID   -
Organism   Vibrio hyugaensis strain 090810a     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2601586..2612230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S74_RS12855 uvrA 2602591..2605413 (-) 2823 WP_045400481.1 excinuclease ABC subunit UvrA -
  C1S74_RS12860 galU 2605551..2606423 (-) 873 WP_045400482.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  C1S74_RS12865 qstR 2606586..2607230 (-) 645 WP_045400483.1 LuxR C-terminal-related transcriptional regulator Regulator
  C1S74_RS12870 ssb 2607511..2608053 (+) 543 WP_038864580.1 single-stranded DNA-binding protein Machinery gene
  C1S74_RS12875 csrD 2608304..2610313 (+) 2010 WP_045400486.1 RNase E specificity factor CsrD -
  C1S74_RS12880 - 2610325..2611779 (+) 1455 WP_045400487.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24521.33 Da        Isoelectric Point: 8.7736

>NTDB_id=263843 C1S74_RS12865 WP_045400483.1 2606586..2607230(-) (qstR) [Vibrio hyugaensis strain 090810a]
MKKSAYARKLFLISMEDHAEKKVEDLVNYTDIDIPVISTDALMEANPKHRNKILMIDFSEHKSLVQSIKNLPLIWKNFET
VVFNVPKRLTTDELLAFGQLKGVFYQDSSLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=263843 C1S74_RS12865 WP_045400483.1 2606586..2607230(-) (qstR) [Vibrio hyugaensis strain 090810a]
GTGAAAAAATCGGCTTATGCGAGAAAACTGTTTCTGATCAGTATGGAAGACCATGCGGAGAAAAAAGTTGAAGACTTGGT
CAACTACACCGATATCGACATTCCAGTGATCTCTACCGACGCGCTCATGGAAGCCAACCCCAAACATCGCAATAAGATCT
TAATGATCGATTTCAGTGAACATAAATCGCTGGTTCAATCGATCAAAAACCTCCCGCTGATATGGAAAAATTTTGAGACC
GTGGTGTTTAATGTCCCCAAGCGTTTAACGACTGATGAATTGCTAGCATTTGGCCAGTTGAAAGGAGTGTTCTATCAAGA
CAGTTCGCTTGAACAAATTGGAGAAGGCTTAAAAGGTATTGTAAACGGACAAAATTGGTTGCCAAGGAACGTAACAAGCC
AATTATTGCATTACTATCGCAACGTCATTAACACACATACTGCGCCTGCCACTGTCGATTTGACCATTCGTGAACTACAA
GTATTACGCTGCCTCCAAGCTGGCGCATCTAATAATCAAATGGCGGAAGAGCTGTTTGTCAGTGAGTTCACCATCAAGTC
ACACTTGTATCAGATATTCAAAAAGCTGTCGGTTAAAAATCGCGTACAAGCCATCGCTTGGGCTGATCAAAACCTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

92.523

100

0.925
  qstR Vibrio parahaemolyticus RIMD 2210633

90.187

100

0.902
  qstR Vibrio cholerae strain A1552

50.935

100

0.509

Multiple sequence alignment