Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C1S74_RS10745 Genome accession   NZ_CP025794
Coordinates   2173535..2175058 (-) Length   507 a.a.
NCBI ID   WP_038870176.1    Uniprot ID   -
Organism   Vibrio hyugaensis strain 090810a     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2168535..2180058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S74_RS10725 - 2169800..2170786 (+) 987 WP_045401064.1 serine/threonine protein kinase -
  C1S74_RS10730 - 2170822..2171424 (+) 603 WP_038870173.1 thiol:disulfide interchange protein DsbA/DsbL -
  C1S74_RS10735 - 2171487..2172365 (-) 879 WP_045401062.1 acyltransferase -
  C1S74_RS10740 - 2172531..2173487 (+) 957 WP_045401060.1 DUF2860 domain-containing protein -
  C1S74_RS10745 comM 2173535..2175058 (-) 1524 WP_038870176.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C1S74_RS10755 ilvG 2175520..2177166 (+) 1647 WP_038870177.1 acetolactate synthase 2 catalytic subunit -
  C1S74_RS10760 ilvM 2177178..2177462 (+) 285 WP_005440786.1 acetolactate synthase 2 small subunit -
  C1S74_RS10765 ilvE 2177475..2178413 (+) 939 WP_045401058.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54831.90 Da        Isoelectric Point: 9.0532

>NTDB_id=263833 C1S74_RS10745 WP_038870176.1 2173535..2175058(-) (comM) [Vibrio hyugaensis strain 090810a]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRPVKGVLPAALAANKSQRHLVVPHANGDQAALVGKEKHKSAQSL
LEVCAELCGQHKLELHQAPKRNVVEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMTD
EEAMETASVASLTQSEINEHNWKTRPLRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQSRTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTSVVKQRVNLARESMLQRSGKVNALLGSREIEAFCPLQKSDAEFLENALHRLGLSIRAYHRIIKVARTIADLEGSAA
IERTHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=263833 C1S74_RS10745 WP_038870176.1 2173535..2175058(-) (comM) [Vibrio hyugaensis strain 090810a]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGTGTGGGTGTGCAAGCGCCATCGGTAAGCGTGGAAGTCCACATCAGCAA
TGGGATGCCGGGCTTTACACTCGTCGGTCTACCAGAAACAACAGTAAAAGAATCTAAAGATCGTGTCCGCAGTGCGATCA
TTAATTCCAACTTCCAATTTCCTGCCAAGCGAATCACGGTAAATTTGGCCCCAGCAGATTTACCCAAGGAAGGTGGGCGC
TTCGATCTACCAATTGCGTTGGGAATTTTAGCTGCTTCAGAGCAAATCGCGACAGATAAGCTTAAAAACTACGAATTTGT
TGGCGAATTGGCACTTTCTGGCGGATTAAGGCCCGTAAAAGGCGTCTTACCCGCCGCGCTGGCCGCAAATAAAAGTCAGC
GTCATTTAGTTGTGCCCCATGCCAACGGTGATCAAGCCGCTTTGGTGGGGAAAGAAAAACACAAATCTGCGCAGTCTTTA
CTGGAAGTGTGCGCTGAGCTTTGTGGTCAGCATAAGTTGGAATTACACCAAGCACCAAAGCGTAATGTCGTCGAAAAGCA
TGGTCGAGATCTGCAAGACATCATTGGGCAGCAACAAGGTAAGCGTGCCTTAGAGATAGCGGCGGCAGGTAATCACAACT
TACTTTTTCTTGGCCCTCCCGGAACGGGTAAAACCATGTTGGCTTCACGACTGTGTGATTTATTGCCTGAGATGACCGAT
GAAGAAGCGATGGAAACGGCATCAGTAGCGTCGCTAACTCAAAGTGAAATCAATGAACACAATTGGAAAACACGCCCGCT
GCGCAGCCCGCATCATTCTAGTTCAATGGCGGCATTGGTCGGGGGAGGCTCAGTGCCTAGACCCGGTGAAATTTCATTGG
CGCATAATGGACTGTTGTTTTTGGATGAGATGCCAGAGTTTGATCGCAAAGTACTCGACTCTTTAAGGGAGCCATTAGAG
TCGGGGGAAATCATTATTTCACGTGCGCAGGGTAAAACTCGTTTTCCGGCTCGATTTCAGTTGGTCGGAGCGCTCAACCC
GAGCCCTACGGGTTATTACGAAGGTAACCAATCTCGCACAAATCCACAGGCGATTTTGCGTTATCTTGGTCGATTATCAG
GGCCGTTGCTTGACCGATTTGATATGTCGTTAGAGATTCCTGCACTGCCGAAAGGTACGTTAGCTGAAGGAGGTGATAGA
GGTGAGCCAACCTCCGTAGTAAAACAAAGAGTCAACTTAGCCAGAGAGAGTATGTTGCAACGCAGTGGCAAGGTAAATGC
CCTGCTGGGGAGCCGAGAAATTGAAGCTTTCTGCCCATTACAAAAATCCGATGCGGAATTTTTAGAGAATGCGCTGCATC
GTCTTGGGTTATCGATTCGTGCCTATCACCGGATTATCAAAGTTGCGCGGACGATTGCTGATCTGGAGGGCTCAGCAGCG
ATTGAACGAACGCATCTTGCAGAAGCGTTAGGGTACAGAGCGATGGATAGATTGCTCAAGCAGTTAACCGCACAGGCGGT
ATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

94.28

100

0.943
  comM Vibrio cholerae strain A1552

84.813

100

0.848
  comM Haemophilus influenzae Rd KW20

65.878

100

0.659
  comM Glaesserella parasuis strain SC1401

64.118

100

0.645
  comM Legionella pneumophila str. Paris

49.597

97.83

0.485
  comM Legionella pneumophila strain ERS1305867

49.597

97.83

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.685

100

0.448

Multiple sequence alignment