Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C1S73_RS12675 Genome accession   NZ_CP025792
Coordinates   2658707..2659249 (+) Length   180 a.a.
NCBI ID   WP_038864580.1    Uniprot ID   A0A2N7N1Z9
Organism   Vibrio jasicida 090810c     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2653707..2664249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S73_RS12660 uvrA 2653788..2656610 (-) 2823 WP_038864588.1 excinuclease ABC subunit UvrA -
  C1S73_RS12665 galU 2656748..2657620 (-) 873 WP_038864585.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  C1S73_RS12670 qstR 2657782..2658426 (-) 645 WP_038864583.1 LuxR C-terminal-related transcriptional regulator Regulator
  C1S73_RS12675 ssb 2658707..2659249 (+) 543 WP_038864580.1 single-stranded DNA-binding protein Machinery gene
  C1S73_RS12680 csrD 2659500..2661509 (+) 2010 WP_038864578.1 RNase E specificity factor CsrD -
  C1S73_RS12685 - 2661521..2662969 (+) 1449 WP_038864577.1 MSHA biogenesis protein MshI -
  C1S73_RS12690 gspM 2662966..2663616 (+) 651 WP_038864576.1 type II secretion system protein GspM -
  C1S73_RS12695 - 2663609..2663941 (+) 333 WP_038864575.1 hypothetical protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 20088.15 Da        Isoelectric Point: 4.9269

>NTDB_id=263795 C1S73_RS12675 WP_038864580.1 2658707..2659249(+) (ssb) [Vibrio jasicida 090810c]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPMGGQQQQQQGGWGQPQQPAQQQYNAPQQQQQPQQQAP
QQPQQQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=263795 C1S73_RS12675 WP_038864580.1 2658707..2659249(+) (ssb) [Vibrio jasicida 090810c]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTTGCAAACATTACGATTGCGACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AGTGGCACCGTGTTGCACTATTCGGCAAGTTGGCGGAAGTAGCAGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGCCAACTTCAAACTCGTAAATGGCAAGATCAAAGTGGTCAAGACCGTTACACTACTGAAGTGGTTGTTCAGGGCTT
CAACGGTGTAATGCAAATGCTAGGCGGTCGTGCTCAAGGTGGCGCTCCTATGGGTGGTCAACAGCAGCAACAGCAAGGCG
GTTGGGGTCAGCCTCAACAACCAGCTCAGCAGCAGTACAACGCTCCACAGCAACAGCAGCAACCTCAACAACAGGCTCCG
CAGCAACCACAGCAGCAATACAACGAGCCACCAATGGACTTCGACGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7N1Z9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

78.689

100

0.8
  ssb Glaesserella parasuis strain SC1401

55.838

100

0.611
  ssb Neisseria meningitidis MC58

45.745

100

0.478
  ssb Neisseria gonorrhoeae MS11

46.667

100

0.467

Multiple sequence alignment