Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   C1S73_RS12670 Genome accession   NZ_CP025792
Coordinates   2657782..2658426 (-) Length   214 a.a.
NCBI ID   WP_038864583.1    Uniprot ID   A0A2N7N206
Organism   Vibrio jasicida 090810c     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2652782..2663426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S73_RS12660 uvrA 2653788..2656610 (-) 2823 WP_038864588.1 excinuclease ABC subunit UvrA -
  C1S73_RS12665 galU 2656748..2657620 (-) 873 WP_038864585.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  C1S73_RS12670 qstR 2657782..2658426 (-) 645 WP_038864583.1 LuxR C-terminal-related transcriptional regulator Regulator
  C1S73_RS12675 ssb 2658707..2659249 (+) 543 WP_038864580.1 single-stranded DNA-binding protein Machinery gene
  C1S73_RS12680 csrD 2659500..2661509 (+) 2010 WP_038864578.1 RNase E specificity factor CsrD -
  C1S73_RS12685 - 2661521..2662969 (+) 1449 WP_038864577.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24563.45 Da        Isoelectric Point: 9.2290

>NTDB_id=263794 C1S73_RS12670 WP_038864583.1 2657782..2658426(-) (qstR) [Vibrio jasicida 090810c]
MKKSAYARKLFLISMEDHAEKKVEDLVKYTDIDIPVISTEALMEANPKHRNKILMIDFSEHKSLVQSIKNLPLIWKNFET
VVFNVPKRLTTDELLAFGQLKGVFYQESSLEQIGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=263794 C1S73_RS12670 WP_038864583.1 2657782..2658426(-) (qstR) [Vibrio jasicida 090810c]
GTGAAAAAATCGGCTTATGCGAGAAAACTGTTTCTGATCAGCATGGAAGACCATGCAGAGAAAAAAGTTGAAGACTTGGT
CAAATACACTGACATTGATATTCCAGTGATCTCCACCGAAGCGCTTATGGAAGCCAATCCCAAACATCGTAATAAGATCT
TAATGATCGATTTCAGTGAGCACAAATCCTTGGTTCAGTCGATTAAGAACCTTCCGTTAATATGGAAAAACTTTGAGACC
GTCGTATTTAACGTCCCTAAGCGTTTAACCACAGATGAACTATTAGCGTTTGGTCAATTAAAGGGAGTCTTCTACCAAGA
GAGCTCACTTGAGCAAATCGGAGAAGGGCTAAAAGGCATCGTAAACGGCCAAAATTGGTTGCCACGAAACGTAACCAGCC
AACTTTTACATTACTATCGCAACGTCATAAACACACATACTGCGCCCGCTACTGTCGATTTGACTATTCGTGAACTGCAA
GTATTACGCTGCCTTCAAGCAGGTGCATCAAATAATCAAATGGCTGAGGAGTTGTTTGTTAGCGAATTCACCATCAAGTC
TCACTTGTATCAGATTTTCAAAAAACTGTCGGTTAAAAATCGCGTGCAAGCCATCGCTTGGGCTGATCAAAACTTGATGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7N206

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

93.458

100

0.935
  qstR Vibrio parahaemolyticus RIMD 2210633

90.654

100

0.907
  qstR Vibrio cholerae strain A1552

51.402

100

0.514

Multiple sequence alignment