Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   C1S73_RS12445 Genome accession   NZ_CP025792
Coordinates   2606511..2607026 (+) Length   171 a.a.
NCBI ID   WP_038865496.1    Uniprot ID   -
Organism   Vibrio jasicida 090810c     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2601511..2612026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S73_RS12425 - 2601626..2604190 (-) 2565 WP_038865504.1 PBP1A family penicillin-binding protein -
  C1S73_RS12430 pilM 2604369..2605385 (+) 1017 WP_038865502.1 type IV pilus assembly protein PilM Machinery gene
  C1S73_RS12435 pilN 2605369..2605935 (+) 567 WP_038865500.1 PilN domain-containing protein Machinery gene
  C1S73_RS12440 pilO 2605928..2606521 (+) 594 WP_038865498.1 type 4a pilus biogenesis protein PilO Machinery gene
  C1S73_RS12445 pilP 2606511..2607026 (+) 516 WP_038865496.1 pilus assembly protein PilP Machinery gene
  C1S73_RS12450 pilQ 2607061..2608812 (+) 1752 WP_038865494.1 type IV pilus secretin PilQ family protein Machinery gene
  C1S73_RS12455 aroK 2609001..2609519 (+) 519 WP_038865492.1 shikimate kinase AroK -
  C1S73_RS12460 aroB 2609551..2610651 (+) 1101 WP_038865490.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19112.21 Da        Isoelectric Point: 10.1761

>NTDB_id=263792 C1S73_RS12445 WP_038865496.1 2606511..2607026(+) (pilP) [Vibrio jasicida 090810c]
MRNSSLLMVCMVTLLTGCQANDESLTGFIRDVENQARRDVSKLKPAEEYVVVNYDPQIMRAPFELPKEATIATQPVARED
CWQPPSRKRTGKLERFPLGQLRLKGVMGMGSSVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVSHNYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=263792 C1S73_RS12445 WP_038865496.1 2606511..2607026(+) (pilP) [Vibrio jasicida 090810c]
ATGCGAAATAGTTCTTTGCTGATGGTTTGTATGGTCACGTTGCTAACGGGTTGCCAAGCCAATGATGAGTCGCTTACCGG
TTTTATTCGTGATGTAGAAAACCAAGCTCGACGTGACGTCTCCAAGCTCAAGCCCGCCGAAGAATATGTGGTGGTCAATT
ACGACCCTCAAATCATGCGAGCACCGTTTGAGCTGCCGAAGGAGGCGACTATAGCCACCCAACCGGTTGCCAGAGAAGAC
TGTTGGCAACCACCTTCAAGGAAGCGAACTGGCAAGTTAGAGCGTTTTCCTCTTGGGCAATTGCGTTTGAAGGGCGTAAT
GGGAATGGGAAGTAGCGTATCTGGGTTAGTCCAAGCGCCGAATGGCACTGTTTATAAAGTAAAACCGGGCCAATATTTAG
GGCGCAACAACGGCAAGGTCACCCATGTATCCCACAACTATTTATTGATTAATGAAACTCTGCCAGACGGTCTGGGTTGT
TGGCAAAAACGCAAAGTTAAGTTGGCGTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

90.643

100

0.906
  pilP Vibrio cholerae strain A1552

56.977

100

0.573

Multiple sequence alignment