Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   DV445_RS04320 Genome accession   NZ_CP031255
Coordinates   869024..869542 (+) Length   172 a.a.
NCBI ID   WP_049249614.1    Uniprot ID   -
Organism   Neisseria elongata strain M15910     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 864024..874542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV445_RS04300 - 864066..866474 (-) 2409 WP_114921754.1 penicillin-binding protein 1A -
  DV445_RS04305 pilM 866606..867721 (+) 1116 WP_234405201.1 type IV pilus assembly protein PilM -
  DV445_RS04310 pilN 867724..868377 (+) 654 WP_107854206.1 PilN domain-containing protein Machinery gene
  DV445_RS04315 - 868379..869005 (+) 627 WP_049249696.1 type 4a pilus biogenesis protein PilO -
  DV445_RS04320 pilP 869024..869542 (+) 519 WP_049249614.1 pilus assembly protein PilP Machinery gene
  DV445_RS04325 pilQ 869562..871709 (+) 2148 WP_199903599.1 type IV pilus secretin PilQ Machinery gene
  DV445_RS04330 - 872579..874456 (+) 1878 WP_107971109.1 monovalent cation:proton antiporter-2 (CPA2) family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19113.64 Da        Isoelectric Point: 4.8248

>NTDB_id=263791 DV445_RS04320 WP_049249614.1 869024..869542(+) (pilP) [Neisseria elongata strain M15910]
MIKKLCLLSSMLLLTACDAEPGDLREWVDATKKEAEGKFTPIDVPQGAPQLTYTPPIQPALDAFNSKRLSTNQNAVNAPD
LNRPKEILESFGLDSMKYVGSFNKKGKISAFVEVDGHVYTVVRGNYIGQNYGRITNIRADAIDITELVEDAYGNWTFRQT
ELILNDSDQAKN

Nucleotide


Download         Length: 519 bp        

>NTDB_id=263791 DV445_RS04320 WP_049249614.1 869024..869542(+) (pilP) [Neisseria elongata strain M15910]
ATGATAAAAAAACTTTGTTTGTTATCCAGTATGTTACTACTGACAGCATGCGATGCTGAACCAGGAGATCTTCGTGAATG
GGTTGATGCAACTAAAAAGGAAGCTGAAGGAAAGTTTACTCCTATAGATGTGCCACAAGGGGCTCCTCAGTTGACTTACA
CTCCTCCTATTCAACCAGCATTAGATGCCTTTAATAGTAAAAGGCTGAGTACTAATCAAAATGCTGTTAATGCTCCAGAT
TTGAACAGGCCAAAAGAAATATTAGAATCTTTTGGTTTAGATAGCATGAAATATGTTGGTTCCTTTAATAAAAAAGGAAA
AATATCAGCGTTTGTTGAGGTTGATGGTCATGTATATACTGTAGTAAGAGGCAATTACATAGGACAGAATTATGGTCGAA
TCACTAATATAAGAGCTGATGCAATAGATATAACGGAATTGGTTGAAGATGCTTATGGTAATTGGACTTTCCGTCAAACT
GAATTAATATTGAATGATTCAGATCAAGCTAAAAATTAG

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(23-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

44.643

97.674

0.436

Multiple sequence alignment