Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   DV445_RS04310 Genome accession   NZ_CP031255
Coordinates   867724..868377 (+) Length   217 a.a.
NCBI ID   WP_107854206.1    Uniprot ID   -
Organism   Neisseria elongata strain M15910     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 862724..873377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV445_RS04295 rpoH 862972..863835 (-) 864 WP_114921753.1 RNA polymerase sigma factor RpoH -
  DV445_RS04300 - 864066..866474 (-) 2409 WP_114921754.1 penicillin-binding protein 1A -
  DV445_RS04305 pilM 866606..867721 (+) 1116 WP_234405201.1 type IV pilus assembly protein PilM -
  DV445_RS04310 pilN 867724..868377 (+) 654 WP_107854206.1 PilN domain-containing protein Machinery gene
  DV445_RS04315 - 868379..869005 (+) 627 WP_049249696.1 type 4a pilus biogenesis protein PilO -
  DV445_RS04320 pilP 869024..869542 (+) 519 WP_049249614.1 pilus assembly protein PilP Machinery gene
  DV445_RS04325 pilQ 869562..871709 (+) 2148 WP_199903599.1 type IV pilus secretin PilQ Machinery gene

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 23594.03 Da        Isoelectric Point: 4.8631

>NTDB_id=263790 DV445_RS04310 WP_107854206.1 867724..868377(+) (pilN) [Neisseria elongata strain M15910]
MINLIKINLLPYREESNQKKKQKFNVLMAASGIIGVALSVVAFMGINQAISAQESRNSFLEDEIKTLDIAIAEIASLKAE
KEDFLAKKQKVEELQSKRFEGAHIIDTLNQLIPEGVFLLSVSSSDEKSYEIKGKASSDNRIAMFMKSLPSTMVFGPPELL
EIKKTDNGQDFIIKSDLSSLSNKGFGAGVEAEPVPLESASSESVVVPVEQNASNGGK

Nucleotide


Download         Length: 654 bp        

>NTDB_id=263790 DV445_RS04310 WP_107854206.1 867724..868377(+) (pilN) [Neisseria elongata strain M15910]
ATGATAAATTTGATTAAGATTAATCTTTTACCGTATAGAGAAGAGTCAAATCAAAAGAAAAAGCAAAAGTTTAATGTTTT
GATGGCTGCTTCAGGAATAATAGGGGTTGCTCTATCAGTAGTGGCTTTTATGGGTATCAATCAAGCTATTTCTGCTCAAG
AAAGTAGAAATAGTTTCTTAGAAGATGAAATTAAAACTTTAGATATAGCAATAGCAGAAATAGCTAGTTTAAAAGCAGAG
AAAGAAGATTTCCTAGCTAAAAAACAGAAAGTGGAGGAGCTACAAAGTAAACGTTTTGAAGGTGCTCATATAATTGATAC
ATTAAATCAACTTATACCGGAAGGGGTTTTTCTGCTCTCAGTTTCTTCATCAGATGAAAAAAGTTATGAGATAAAAGGTA
AGGCTTCTAGTGATAATAGAATTGCAATGTTTATGAAATCATTACCTTCCACAATGGTGTTTGGGCCACCGGAGCTTTTA
GAGATTAAAAAAACAGATAATGGTCAGGATTTTATTATTAAATCAGATTTAAGCTCTCTAAGTAATAAGGGATTTGGTGC
TGGAGTAGAAGCTGAGCCTGTGCCGTTAGAATCTGCGTCTAGTGAATCAGTAGTGGTGCCTGTTGAGCAAAATGCGTCGA
ATGGGGGGAAATAA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(103-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

45.763

81.567

0.373

Multiple sequence alignment