Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   C1S73_RS12435 Genome accession   NZ_CP025792
Coordinates   2605369..2605935 (+) Length   188 a.a.
NCBI ID   WP_038865500.1    Uniprot ID   -
Organism   Vibrio jasicida 090810c     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2600369..2610935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S73_RS12420 oxyR 2600648..2601556 (+) 909 WP_038865506.1 DNA-binding transcriptional regulator OxyR -
  C1S73_RS12425 - 2601626..2604190 (-) 2565 WP_038865504.1 PBP1A family penicillin-binding protein -
  C1S73_RS12430 pilM 2604369..2605385 (+) 1017 WP_038865502.1 type IV pilus assembly protein PilM Machinery gene
  C1S73_RS12435 pilN 2605369..2605935 (+) 567 WP_038865500.1 PilN domain-containing protein Machinery gene
  C1S73_RS12440 pilO 2605928..2606521 (+) 594 WP_038865498.1 type 4a pilus biogenesis protein PilO Machinery gene
  C1S73_RS12445 pilP 2606511..2607026 (+) 516 WP_038865496.1 pilus assembly protein PilP Machinery gene
  C1S73_RS12450 pilQ 2607061..2608812 (+) 1752 WP_038865494.1 type IV pilus secretin PilQ family protein Machinery gene
  C1S73_RS12455 aroK 2609001..2609519 (+) 519 WP_038865492.1 shikimate kinase AroK -
  C1S73_RS12460 aroB 2609551..2610651 (+) 1101 WP_038865490.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 21962.24 Da        Isoelectric Point: 7.5171

>NTDB_id=263790 C1S73_RS12435 WP_038865500.1 2605369..2605935(+) (pilN) [Vibrio jasicida 090810c]
MLYHINLLPWRENQREEHRRRFVGLIVLGVIAALGVQWGIGKYYQYQQDQQQQRLDYLAHYISQLDKRIEAMKIAEQEHG
KILERLKTVEGLQNGRNKTTEFMNLMPSVIPDGVYVDKIKMNDFEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFKEAEGEQRG

Nucleotide


Download         Length: 567 bp        

>NTDB_id=263790 C1S73_RS12435 WP_038865500.1 2605369..2605935(+) (pilN) [Vibrio jasicida 090810c]
ATGCTCTATCACATTAACCTGCTCCCTTGGCGTGAAAATCAGCGTGAAGAACACCGCCGCCGTTTTGTCGGTTTGATTGT
GCTTGGTGTTATTGCGGCGCTGGGTGTGCAGTGGGGAATCGGTAAATACTACCAGTATCAACAAGATCAGCAGCAACAGC
GTTTGGACTACCTAGCACACTATATATCTCAGTTGGATAAACGCATTGAGGCAATGAAGATTGCAGAGCAAGAGCACGGC
AAAATCCTAGAGCGTTTGAAAACGGTGGAAGGTTTACAAAACGGACGTAACAAAACCACTGAGTTTATGAACTTGATGCC
GTCGGTGATTCCGGATGGTGTCTACGTCGACAAAATCAAAATGAACGATTTTGAGATTGAAATCTCTGGTATTTCAGACA
GCACACCACGTTTGGCGACGATGTTAGACAATATGGAACGCTCTGCGAAGTTACTTGATGTAGAGATGCATTCTATCGTT
CATGGTAAAGCGCGTTTTGGTAAAGAGTTCCAAACGTTCAAAGTCTCTTTCATGTTTAAAGAAGCGGAAGGAGAGCAACG
TGGTTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

91.099

100

0.926
  pilN Vibrio cholerae strain A1552

59.259

100

0.596

Multiple sequence alignment