Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   DV445_RS04405 Genome accession   NZ_CP031255
Coordinates   888546..889037 (+) Length   163 a.a.
NCBI ID   WP_234404681.1    Uniprot ID   -
Organism   Neisseria elongata strain M15910     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 883546..894037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV445_RS04380 - 884326..884496 (+) 171 WP_040666303.1 rubredoxin -
  DV445_RS04385 dnaB 884588..886000 (+) 1413 WP_107971114.1 replicative DNA helicase -
  DV445_RS04390 - 886117..886842 (+) 726 WP_107854214.1 pilus assembly FimT family protein -
  DV445_RS04395 pilV 886829..887437 (+) 609 WP_159069914.1 type IV pilus modification protein PilV -
  DV445_RS04400 - 887443..888546 (+) 1104 WP_107854216.1 PilW family protein -
  DV445_RS04405 pilK 888546..889037 (+) 492 WP_234404681.1 pilus assembly PilX family protein Machinery gene
  DV445_RS04410 - 889048..889527 (+) 480 WP_234404682.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  DV445_RS04415 hpnD 889627..890475 (+) 849 WP_107854219.1 presqualene diphosphate synthase HpnD -
  DV445_RS04420 hpnE 890472..891773 (+) 1302 WP_107854220.1 hydroxysqualene dehydroxylase HpnE -
  DV445_RS04425 surE 891877..892629 (+) 753 WP_107854221.1 5'/3'-nucleotidase SurE -
  DV445_RS04430 - 892754..893731 (+) 978 WP_107854222.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17950.47 Da        Isoelectric Point: 4.6109

>NTDB_id=263793 DV445_RS04405 WP_234404681.1 888546..889037(+) (pilK) [Neisseria elongata strain M15910]
MKSQDNVKGFSLPIVMIMMLVLAILVLAATQLFNTESRLSSNDADRKMTMQIAEAALRQGEQAIVDQDLVDLDKKAQFTS
NCDNGLCLPSKSKQAVWEGGSNSLLETNGKEYAADTVVNKKPKYVIEWISDGTEQIVYRVTARAWGENTNTVVTLQSYVA
ADI

Nucleotide


Download         Length: 492 bp        

>NTDB_id=263793 DV445_RS04405 WP_234404681.1 888546..889037(+) (pilK) [Neisseria elongata strain M15910]
ATGAAGAGCCAAGATAATGTGAAAGGATTTTCTCTTCCTATTGTGATGATTATGATGTTGGTGCTCGCTATTTTAGTTTT
GGCTGCGACACAGCTATTCAATACTGAAAGTCGGCTGAGTAGTAATGACGCAGATCGTAAAATGACAATGCAGATTGCGG
AGGCAGCTTTACGTCAAGGAGAGCAAGCTATTGTAGATCAAGATTTAGTTGATCTTGATAAAAAAGCACAATTTACTTCT
AATTGCGATAATGGCTTGTGCCTACCATCGAAATCTAAACAGGCCGTTTGGGAGGGAGGGAGTAATAGTTTACTGGAAAC
AAACGGTAAAGAATATGCTGCAGATACCGTAGTGAATAAAAAACCGAAGTATGTGATTGAATGGATTTCGGATGGTACTG
AGCAGATTGTTTATCGAGTTACTGCGAGGGCGTGGGGGGAGAATACTAATACAGTTGTCACCTTACAATCATATGTTGCG
GCGGATATTTAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(84-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

36.842

100

0.429

Multiple sequence alignment