Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   C1S73_RS12450 Genome accession   NZ_CP025792
Coordinates   2607061..2608812 (+) Length   583 a.a.
NCBI ID   WP_038865494.1    Uniprot ID   A0A2N7MT67
Organism   Vibrio jasicida 090810c     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2602061..2613812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S73_RS12430 pilM 2604369..2605385 (+) 1017 WP_038865502.1 type IV pilus assembly protein PilM Machinery gene
  C1S73_RS12435 pilN 2605369..2605935 (+) 567 WP_038865500.1 PilN domain-containing protein Machinery gene
  C1S73_RS12440 pilO 2605928..2606521 (+) 594 WP_038865498.1 type 4a pilus biogenesis protein PilO Machinery gene
  C1S73_RS12445 pilP 2606511..2607026 (+) 516 WP_038865496.1 pilus assembly protein PilP Machinery gene
  C1S73_RS12450 pilQ 2607061..2608812 (+) 1752 WP_038865494.1 type IV pilus secretin PilQ family protein Machinery gene
  C1S73_RS12455 aroK 2609001..2609519 (+) 519 WP_038865492.1 shikimate kinase AroK -
  C1S73_RS12460 aroB 2609551..2610651 (+) 1101 WP_038865490.1 3-dehydroquinate synthase -
  C1S73_RS12465 - 2610704..2612203 (+) 1500 WP_038865488.1 AAA family ATPase -
  C1S73_RS12470 - 2612273..2613112 (+) 840 WP_038865486.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 63953.98 Da        Isoelectric Point: 4.5240

>NTDB_id=263793 C1S73_RS12450 WP_038865494.1 2607061..2608812(+) (pilQ) [Vibrio jasicida 090810c]
MKMRQGLTRIPRKLIGLFSFWLFLFLAPFAVANEVQSNAFKSIDFRTNKDKDAVIVVELASPAAIVDIKRVQEGLSIDLL
NTSVKDDQLYLLDVKDFSTVVESVEIFRDTSTTRLVAYIDEDYTHDYRLTGRYLEVKVGKLKPNEKVPDKSILEKEGKLI
SINFQDIPVRNVLQLIADYNQFNLVVSDSVEGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKDELDLREKQQ
LEKQKLEQEMGDLSSEIIKVNFAKASDIAEMINGEGNISMLSDRGSMTIDERTNSLLIRELPSNIEVIREIIESLDIPVK
QVQIEARIVTINEGNMDELGVRWGFTSINGSHTVGGSIENNLATIGLYDGGGGDGEGDDGGGSVGIDDFLNVNLAATSPN
ATSLAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVTFKKAVLSLKVTP
QITPDNRLVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALF
RRSYENVGKSELLIFVTPKVVIQ

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=263793 C1S73_RS12450 WP_038865494.1 2607061..2608812(+) (pilQ) [Vibrio jasicida 090810c]
ATGAAAATGAGACAAGGATTAACACGTATACCAAGGAAGCTAATAGGGCTCTTCTCTTTTTGGTTGTTTTTATTTTTAGC
CCCTTTCGCAGTCGCGAACGAAGTTCAGTCTAATGCCTTCAAAAGCATTGATTTCCGTACCAATAAAGACAAAGACGCGG
TGATCGTGGTTGAGCTTGCTTCGCCTGCTGCCATTGTGGACATCAAGCGCGTGCAAGAAGGCTTGAGTATCGATTTGCTC
AATACGTCAGTTAAAGATGATCAGCTTTATCTTCTTGATGTAAAAGACTTCTCTACCGTAGTGGAAAGTGTCGAGATATT
TCGTGATACCTCGACAACGCGCCTCGTGGCTTATATTGATGAAGACTATACCCATGATTACCGTCTGACAGGGCGATACT
TGGAAGTTAAAGTGGGTAAGCTCAAGCCGAACGAAAAGGTGCCAGACAAAAGTATTCTGGAAAAAGAAGGCAAGTTGATT
TCGATTAACTTCCAAGACATCCCAGTGCGTAACGTTCTGCAACTTATCGCGGATTATAACCAGTTCAACTTAGTTGTTTC
TGACTCAGTAGAAGGCAATCTCACATTGCGTCTTGATGGTGTGCCTTGGCAGCAAGTACTCGATATCATTCTGCAAGTAA
AAGGCTTAGACAAACGCGTGGATGGCAACGTTATTCTGGTCGCACCAAAAGATGAGCTGGACTTGCGTGAGAAGCAGCAG
TTAGAGAAGCAGAAGCTTGAGCAAGAGATGGGAGATCTTTCTTCGGAGATCATCAAAGTGAACTTTGCGAAAGCCTCTGA
TATCGCAGAGATGATCAATGGTGAAGGTAATATCAGCATGTTGTCGGACCGCGGCAGTATGACGATTGATGAACGCACCA
ATTCTCTGCTGATTCGAGAGCTTCCTAGTAACATTGAAGTGATTCGTGAAATCATAGAGTCTCTCGATATTCCAGTGAAA
CAGGTTCAAATTGAAGCGCGTATCGTTACCATCAATGAAGGTAATATGGACGAGCTGGGTGTTCGTTGGGGCTTTACTTC
TATTAATGGTAGTCACACGGTGGGTGGTTCTATCGAAAACAACCTTGCCACTATCGGCCTTTATGATGGCGGAGGTGGTG
ACGGCGAAGGTGACGACGGTGGTGGTAGTGTCGGTATCGATGACTTCCTTAACGTCAACTTGGCAGCAACCAGTCCAAAT
GCAACCAGCCTTGCCTTTCAAGTGGCTAAGCTAGGTTCTGACACCTTGTTGGATTTAGAGCTGTCTGCACTACAACAAGA
ATCAAAAGCTGAAATCATTTCAAGTCCACGTCTCATTACCACTAACAAAAAACCGGCCTATATAGAGCAAGGTACAGAGA
TCCCTTATTTAGAGTCGTCATCCAGTGGTGCAACTTCTGTGACCTTTAAAAAAGCTGTGCTTAGTTTGAAGGTGACACCG
CAGATTACTCCTGACAACCGTTTGGTGCTGGATTTAAGTGTTACGCAAGATAGACCAGGGCAAGTGGTAAAAACGGGTAC
TGGTGAGGCGGTAGCGATCGATACTCAACGTATTGGTACTCAAGTGTTAGTGAATAACGGAGAGACCGTCGTACTCGGTG
GTATTTTCCAACATAGTATTACCAACTCCGTCGATAAGGTGCCTTTATTAGGTGATTTACCTCTGTTAGGAGCGCTTTTC
CGCCGAAGTTACGAAAATGTAGGCAAAAGTGAGTTGTTGATTTTTGTTACACCGAAGGTCGTTATTCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(423-581)

Bacterial type II/III secretion system short domain (Secretin_N)

(256-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7MT67

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

94.511

100

0.945
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

76.45

97.599

0.746
  pilQ Vibrio cholerae strain A1552

76.45

97.599

0.746
  pilQ Legionella pneumophila strain Lp02

41.273

94.34

0.389
  pilQ Legionella pneumophila strain ERS1305867

41.273

94.34

0.389
  pilQ Pseudomonas aeruginosa PAK

39.685

98.113

0.389
  comQ Acinetobacter baylyi ADP1

36.986

100

0.37
  pilQ Acinetobacter baumannii D1279779

36.088

100

0.367
  pilQ Acinetobacter baumannii strain A118

36.088

100

0.367

Multiple sequence alignment