Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   C1S73_RS12430 Genome accession   NZ_CP025792
Coordinates   2604369..2605385 (+) Length   338 a.a.
NCBI ID   WP_038865502.1    Uniprot ID   A0A2N7MT22
Organism   Vibrio jasicida 090810c     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2599369..2610385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S73_RS12415 - 2599746..2600474 (-) 729 WP_038865508.1 redoxin family protein -
  C1S73_RS12420 oxyR 2600648..2601556 (+) 909 WP_038865506.1 DNA-binding transcriptional regulator OxyR -
  C1S73_RS12425 - 2601626..2604190 (-) 2565 WP_038865504.1 PBP1A family penicillin-binding protein -
  C1S73_RS12430 pilM 2604369..2605385 (+) 1017 WP_038865502.1 type IV pilus assembly protein PilM Machinery gene
  C1S73_RS12435 pilN 2605369..2605935 (+) 567 WP_038865500.1 PilN domain-containing protein Machinery gene
  C1S73_RS12440 pilO 2605928..2606521 (+) 594 WP_038865498.1 type 4a pilus biogenesis protein PilO Machinery gene
  C1S73_RS12445 pilP 2606511..2607026 (+) 516 WP_038865496.1 pilus assembly protein PilP Machinery gene
  C1S73_RS12450 pilQ 2607061..2608812 (+) 1752 WP_038865494.1 type IV pilus secretin PilQ family protein Machinery gene
  C1S73_RS12455 aroK 2609001..2609519 (+) 519 WP_038865492.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 37865.27 Da        Isoelectric Point: 6.4321

>NTDB_id=263789 C1S73_RS12430 WP_038865502.1 2604369..2605385(+) (pilM) [Vibrio jasicida 090810c]
MDKLLVTGIDIGHNSLKAVVLKPNGNSYALLGYKEIILKEGIVAENNTINHQEIVKTLKEMKKDLPFRANRVAISVPDNA
VISKKLQIEQSLEESEKEFAVVQAFSHQSPFPVEELSLDFVLVESDEQMRGTESYQVFATRKDVVETRVEALQKSGLKTV
LVDVHSQSLGHIWKLTTERYPDKSKYCLLDIGVLNSSFTMFTEQGELFHKEFVCGTRAASGLLHDNPLSDDAQVMTEQFN
RQVVDRVKRQMQLYTSINGSQDIKGIWLSGEGASTPMLAEELSSQLALECELLNPLGLFEMKVSKRKRRAADWQHFTTAA
GLAVRGIQWLGGHHALSH

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=263789 C1S73_RS12430 WP_038865502.1 2604369..2605385(+) (pilM) [Vibrio jasicida 090810c]
ATGGATAAGCTATTAGTTACGGGCATAGATATCGGCCATAACAGCCTCAAAGCCGTGGTACTTAAACCCAATGGCAACAG
TTATGCCTTACTGGGTTACAAAGAAATAATACTTAAAGAAGGTATTGTCGCTGAAAATAACACCATAAATCATCAAGAAA
TTGTAAAGACCCTAAAAGAGATGAAAAAAGACCTCCCTTTTAGGGCTAATCGAGTCGCGATTTCAGTTCCTGACAATGCG
GTGATCAGCAAAAAACTGCAAATCGAACAAAGTTTAGAGGAAAGTGAAAAAGAGTTTGCCGTCGTACAGGCTTTTTCTCA
TCAATCGCCGTTCCCTGTAGAAGAGCTTAGTCTTGATTTTGTATTAGTGGAATCTGATGAGCAAATGCGTGGGACAGAAA
GCTATCAAGTTTTCGCAACACGTAAAGACGTGGTGGAAACCCGCGTAGAAGCATTGCAAAAATCTGGTCTAAAAACCGTG
CTGGTGGACGTGCATTCCCAAAGTCTTGGGCATATCTGGAAGTTAACCACGGAACGCTACCCTGACAAAAGCAAATACTG
TCTACTGGACATCGGGGTATTAAATAGCTCGTTCACTATGTTTACCGAGCAAGGTGAGTTATTCCATAAAGAGTTTGTGT
GTGGCACTCGTGCCGCTAGTGGCCTTTTGCACGACAACCCGCTTTCTGATGATGCTCAAGTCATGACAGAACAATTCAAC
CGTCAAGTTGTGGATCGCGTGAAACGTCAAATGCAACTCTATACCTCTATTAATGGTTCTCAAGATATTAAAGGTATTTG
GCTCTCCGGTGAGGGGGCGTCCACCCCAATGTTAGCTGAAGAGCTCTCCAGTCAACTGGCGCTCGAATGTGAGTTGCTTA
ACCCACTGGGCTTATTTGAAATGAAAGTTTCTAAGCGCAAGCGCCGCGCCGCAGATTGGCAGCACTTCACTACCGCTGCG
GGTTTGGCAGTTCGTGGTATCCAGTGGCTGGGAGGTCATCATGCTCTATCACATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7MT22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio campbellii strain DS40M4

88.462

100

0.885
  pilM Vibrio cholerae strain A1552

49.415

100

0.5

Multiple sequence alignment