Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C1S73_RS10750 Genome accession   NZ_CP025792
Coordinates   2272412..2273935 (+) Length   507 a.a.
NCBI ID   WP_038870176.1    Uniprot ID   -
Organism   Vibrio jasicida 090810c     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2267412..2278935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1S73_RS10735 ilvE 2269056..2269994 (-) 939 WP_038870178.1 branched-chain-amino-acid transaminase -
  C1S73_RS10740 ilvM 2270007..2270291 (-) 285 WP_005440786.1 acetolactate synthase 2 small subunit -
  C1S73_RS10745 ilvG 2270303..2271949 (-) 1647 WP_038870177.1 acetolactate synthase 2 catalytic subunit -
  C1S73_RS10750 comM 2272412..2273935 (+) 1524 WP_038870176.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C1S73_RS10755 - 2273983..2274939 (-) 957 WP_038870175.1 DUF2860 domain-containing protein -
  C1S73_RS10760 - 2275105..2275983 (+) 879 WP_038870174.1 acyltransferase -
  C1S73_RS10765 - 2276047..2276649 (-) 603 WP_038870173.1 thiol:disulfide interchange protein DsbA/DsbL -
  C1S73_RS10770 - 2276685..2277671 (-) 987 WP_038870169.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54831.90 Da        Isoelectric Point: 9.0532

>NTDB_id=263785 C1S73_RS10750 WP_038870176.1 2272412..2273935(+) (comM) [Vibrio jasicida 090810c]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRPVKGVLPAALAANKSQRHLVVPHANGDQAALVGKEKHKSAQSL
LEVCAELCGQHKLELHQAPKRNVVEKHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMTD
EEAMETASVASLTQSEINEHNWKTRPLRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQSRTNPQAILRYLGRLSGPLLDRFDMSLEIPALPKGTLAEGGDR
GEPTSVVKQRVNLARESMLQRSGKVNALLGSREIEAFCPLQKSDAEFLENALHRLGLSIRAYHRIIKVARTIADLEGSAA
IERTHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=263785 C1S73_RS10750 WP_038870176.1 2272412..2273935(+) (comM) [Vibrio jasicida 090810c]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGTGTGGGTGTGCAAGCGCCATCGGTAAGTGTGGAAGTCCACATCAGCAA
TGGGATGCCGGGCTTTACACTCGTCGGTCTACCAGAAACAACAGTAAAAGAATCTAAAGATCGTGTCCGCAGTGCGATCA
TTAATTCCAACTTCCAATTTCCTGCCAAGCGAATCACGGTAAATTTGGCCCCAGCAGATTTACCCAAGGAAGGTGGGCGC
TTCGATCTACCAATTGCGTTGGGAATTTTAGCCGCTTCAGAGCAAATCGCGACAGATAAGCTTAAAAACTACGAATTTGT
TGGCGAGTTGGCACTTTCTGGCGGATTAAGGCCCGTAAAAGGCGTCTTACCCGCCGCGCTGGCCGCAAATAAAAGTCAGC
GTCATTTAGTTGTGCCCCATGCCAACGGTGATCAAGCCGCTTTGGTGGGGAAAGAAAAACACAAATCCGCGCAGTCTTTG
CTGGAAGTGTGCGCTGAGCTTTGTGGTCAGCATAAGTTGGAATTACACCAAGCACCAAAGCGTAATGTCGTCGAAAAGCA
TGGTCGAGATCTGCAAGACATCATTGGGCAGCAACAAGGTAAACGTGCCTTAGAGATAGCGGCGGCAGGTAATCACAACT
TACTTTTTCTTGGCCCTCCCGGAACGGGTAAAACCATGTTGGCTTCACGACTGTGTGATTTATTGCCTGAGATGACCGAT
GAAGAAGCGATGGAAACGGCATCAGTAGCGTCGCTAACTCAAAGTGAAATCAATGAACATAATTGGAAAACACGCCCGCT
GCGCAGCCCGCATCATTCTAGTTCAATGGCGGCATTGGTCGGGGGAGGCTCAGTGCCTAGACCCGGTGAAATTTCATTGG
CGCATAATGGACTGTTGTTTTTGGATGAGATGCCAGAGTTTGATCGCAAAGTACTCGACTCTTTAAGGGAGCCATTAGAG
TCGGGGGAGATCATTATTTCACGTGCGCAGGGTAAAACCCGTTTTCCGGCTCGATTTCAGTTGGTCGGAGCGCTCAACCC
GAGCCCTACGGGTTATTACGAAGGTAACCAATCTCGCACAAATCCACAGGCGATTTTGCGTTATCTTGGTCGATTGTCAG
GGCCGTTGCTTGACCGATTTGATATGTCGTTAGAGATTCCTGCATTGCCGAAAGGTACGTTAGCTGAAGGAGGTGATAGA
GGTGAGCCAACCTCCGTAGTAAAACAAAGGGTCAACTTAGCCAGAGAGAGTATGTTGCAACGCAGTGGTAAGGTAAATGC
CCTGTTGGGGAGTCGAGAAATTGAAGCTTTCTGCCCATTACAAAAATCCGATGCGGAATTTTTAGAGAATGCGCTGCATC
GTCTTGGGTTATCGATTCGTGCCTATCACCGGATTATTAAAGTTGCGCGGACGATTGCTGATCTGGAGGGCTCAGCAGCG
ATTGAACGAACGCATCTTGCAGAAGCGTTAGGGTACAGAGCGATGGATAGATTGCTCAAGCAGTTAACCGCACAGGCGGT
ATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

94.28

100

0.943
  comM Vibrio cholerae strain A1552

84.813

100

0.848
  comM Haemophilus influenzae Rd KW20

65.878

100

0.659
  comM Glaesserella parasuis strain SC1401

64.118

100

0.645
  comM Legionella pneumophila str. Paris

49.597

97.83

0.485
  comM Legionella pneumophila strain ERS1305867

49.597

97.83

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.685

100

0.448

Multiple sequence alignment