Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C1H71_RS04560 Genome accession   NZ_CP025781
Coordinates   1033782..1034291 (-) Length   169 a.a.
NCBI ID   WP_130105507.1    Uniprot ID   A0A7G3G707
Organism   Iodobacter fluviatilis strain PCH194     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1028782..1039291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1H71_RS04530 (C1H71_04565) - 1029028..1029846 (-) 819 WP_130105502.1 restriction endonuclease subunit S -
  C1H71_RS20600 (C1H71_04575) - 1030076..1030636 (-) 561 WP_188053583.1 transposase -
  C1H71_RS20925 - 1030741..1031355 (-) 615 WP_262488436.1 YhcG family protein -
  C1H71_RS21280 - 1031344..1031838 (-) 495 Protein_899 DUF1016 N-terminal domain-containing protein -
  C1H71_RS04550 (C1H71_04585) - 1031835..1032044 (-) 210 WP_130105505.1 hypothetical protein -
  C1H71_RS04555 (C1H71_04590) - 1032034..1033587 (-) 1554 WP_130105506.1 class I SAM-dependent DNA methyltransferase -
  C1H71_RS04560 (C1H71_04595) ssb 1033782..1034291 (-) 510 WP_130105507.1 single-stranded DNA-binding protein Machinery gene
  C1H71_RS04565 (C1H71_04600) - 1034335..1035705 (-) 1371 WP_130105508.1 MFS transporter -
  C1H71_RS04570 (C1H71_04605) uvrA 1035906..1038761 (+) 2856 WP_130105509.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18523.54 Da        Isoelectric Point: 5.2517

>NTDB_id=263735 C1H71_RS04560 WP_130105507.1 1033782..1034291(-) (ssb) [Iodobacter fluviatilis strain PCH194]
MASLNKVILIGNLGKDPENRFMPSGGAVCNFSIATTESWKDKATGQKQEKTEWHNITMYNRLAEIAAQYLKKGSSVYIEG
RLQTRKWQDKTTGQDRYTTEIIADQMQMLGGRSGNSSGPADTGYDDGGFNQQPAYQQQQAAPAPARQPAPAPAAAAPKSF
DDFEDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=263735 C1H71_RS04560 WP_130105507.1 1033782..1034291(-) (ssb) [Iodobacter fluviatilis strain PCH194]
ATGGCTTCATTGAATAAAGTAATTCTGATCGGCAACTTAGGTAAAGATCCTGAAAATCGCTTCATGCCATCGGGCGGCGC
AGTGTGTAACTTCAGCATTGCCACTACCGAAAGCTGGAAAGACAAAGCCACAGGCCAAAAGCAAGAAAAAACCGAATGGC
ACAACATCACCATGTACAACCGCCTAGCTGAAATCGCCGCGCAGTACCTGAAAAAAGGCTCATCGGTTTATATCGAAGGC
CGTCTGCAAACGCGTAAATGGCAAGACAAAACCACCGGCCAAGACCGCTACACCACCGAAATTATCGCCGACCAAATGCA
AATGTTGGGTGGGCGCAGCGGTAATAGCAGCGGCCCAGCCGATACTGGCTACGACGACGGCGGCTTTAATCAGCAGCCCG
CCTATCAGCAACAACAAGCCGCCCCAGCTCCAGCCCGCCAACCAGCACCCGCGCCAGCTGCCGCAGCACCGAAAAGCTTT
GATGATTTTGAGGATGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G3G707

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

56.667

100

0.604
  ssb Vibrio cholerae strain A1552

55.135

100

0.604
  ssb Neisseria meningitidis MC58

54.098

100

0.586
  ssb Glaesserella parasuis strain SC1401

51.381

100

0.55

Multiple sequence alignment