Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DV401_RS04080 Genome accession   NZ_CP031254
Coordinates   805102..805704 (-) Length   200 a.a.
NCBI ID   WP_005626527.1    Uniprot ID   A0ABY1VST8
Organism   Haemophilus influenzae strain M25588     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 800102..810704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV401_RS04060 - 801157..802383 (-) 1227 WP_114877295.1 tyrosine-type recombinase/integrase -
  DV401_RS04070 secG 802681..803022 (-) 342 WP_005649335.1 preprotein translocase subunit SecG -
  DV401_RS04075 - 803131..805086 (-) 1956 WP_071162878.1 DNA topoisomerase III -
  DV401_RS04080 recR 805102..805704 (-) 603 WP_005626527.1 recombination mediator RecR Machinery gene
  DV401_RS04085 - 805837..806166 (-) 330 WP_071162877.1 YbaB/EbfC family nucleoid-associated protein -
  DV401_RS04090 - 806319..807164 (-) 846 WP_071162876.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  DV401_RS04095 - 807237..809831 (-) 2595 WP_071162875.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22107.23 Da        Isoelectric Point: 6.4843

>NTDB_id=263734 DV401_RS04080 WP_005626527.1 805102..805704(-) (recR) [Haemophilus influenzae strain M25588]
MQSSPLLEHLIENLRCLPGVGPKSAQRMAYHLLQRNRSGGMNLARALTEAMSKIGHCSQCRDFTEEDTCNICNNPRRQNS
GLLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLVEESFHEVILATNPTVEGDATANYIAEM
CRQHNIKVSRIAHGIPVGGELETVDGTTLTHSFLGRRQID

Nucleotide


Download         Length: 603 bp        

>NTDB_id=263734 DV401_RS04080 WP_005626527.1 805102..805704(-) (recR) [Haemophilus influenzae strain M25588]
ATGCAAAGCAGCCCACTTTTAGAACACCTTATTGAAAACTTACGTTGTCTTCCAGGCGTAGGGCCTAAATCTGCGCAACG
TATGGCTTATCATCTTTTACAACGTAATCGTAGCGGTGGAATGAATTTAGCTCGAGCACTCACAGAAGCTATGTCTAAAA
TTGGTCATTGTTCACAATGTCGAGACTTTACGGAAGAAGACACTTGCAACATTTGCAATAATCCACGCCGTCAAAATTCA
GGTTTGCTTTGTGTCGTTGAAATGCCAGCTGATATTCAAGCGATTGAGCAAACGGGGCAATTTTCAGGACGTTATTTTGT
TTTAATGGGACATTTGTCTCCACTTGATGGTATTGGGCCTCGTGAAATTGGCTTAGATTTACTGCAAAAACGCTTAGTAG
AAGAATCTTTCCACGAAGTGATTCTTGCAACAAATCCAACGGTGGAGGGCGATGCGACGGCAAACTATATTGCTGAAATG
TGCCGCCAACATAATATCAAAGTGAGTCGTATCGCTCACGGTATCCCGGTCGGTGGTGAACTGGAAACTGTGGACGGCAC
AACGCTTACTCACTCTTTTCTAGGTCGTCGTCAAATCGACTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(83-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.5

0.44
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.216

99.5

0.43

Multiple sequence alignment