Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   WM46_RS21665 Genome accession   NZ_CP025757
Coordinates   4438808..4439335 (+) Length   175 a.a.
NCBI ID   WP_046493925.1    Uniprot ID   -
Organism   Citrobacter freundii complex sp. CFNIH2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4433808..4444335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WM46_RS21650 (WM46_21535) aphA 4434501..4435214 (+) 714 WP_102603292.1 acid phosphatase AphA -
  WM46_RS21655 (WM46_21540) - 4435341..4435691 (+) 351 WP_102603293.1 MmcQ/YjbR family DNA-binding protein -
  WM46_RS21660 (WM46_21545) uvrA 4435733..4438555 (-) 2823 WP_061075571.1 excinuclease ABC subunit UvrA -
  WM46_RS21665 (WM46_21550) ssb 4438808..4439335 (+) 528 WP_046493925.1 single-stranded DNA-binding protein SSB1 Machinery gene
  WM46_RS21670 (WM46_21555) - 4439586..4440017 (+) 432 WP_061075570.1 universal stress protein -
  WM46_RS21675 (WM46_21560) - 4440083..4442791 (-) 2709 WP_102603294.1 cation-transporting P-type ATPase -
  WM46_RS21680 (WM46_21565) - 4443352..4443633 (-) 282 WP_042999048.1 YjcB family protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18907.95 Da        Isoelectric Point: 5.2456

>NTDB_id=263710 WM46_RS21665 WP_046493925.1 4438808..4439335(+) (ssb) [Citrobacter freundii complex sp. CFNIH2]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGQQQQGSWGQPQQPQGGNQFSGGAQSRPQQQSAPAA
PSNEPPMDFDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=263710 WM46_RS21665 WP_046493925.1 4438808..4439335(+) (ssb) [Citrobacter freundii complex sp. CFNIH2]
ATGGCCAGCAGAGGCGTAAATAAGGTTATTCTCGTGGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAATGG
TGGCGCAGTCGCCAACATCACGCTGGCTACTTCCGAATCCTGGCGTGACAAGCAGACCGGCGAGATGAAAGAGCAGACGG
AATGGCACCGTGTTGTGCTGTTCGGCAAACTGGCGGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTCTACATT
GAAGGTCAGTTGCGTACCCGCAAATGGACCGATCAGTCCGGCGTTGAGAAATACACCACGGAAGTGGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGTGGCGGCGCACCGGCAGGCGGTCAGCAGCAGCAGGGCAGCTGGGGTC
AGCCTCAGCAGCCACAGGGCGGTAACCAGTTCAGCGGCGGTGCGCAGTCTCGCCCGCAGCAGCAGTCAGCACCGGCAGCG
CCGTCTAATGAACCGCCGATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.033

100

0.766
  ssb Glaesserella parasuis strain SC1401

57.609

100

0.606
  ssb Neisseria meningitidis MC58

47.778

100

0.491
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.491
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.371

Multiple sequence alignment