Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WM46_RS19360 Genome accession   NZ_CP025757
Coordinates   3939911..3941431 (+) Length   506 a.a.
NCBI ID   WP_102603067.1    Uniprot ID   A0A2K9PF94
Organism   Citrobacter freundii complex sp. CFNIH2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3934911..3946431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WM46_RS19335 (WM46_19215) ilvE 3936465..3937394 (-) 930 WP_061075795.1 branched-chain-amino-acid transaminase -
  WM46_RS19340 (WM46_19220) ilvM 3937413..3937676 (-) 264 WP_042326055.1 acetolactate synthase 2 small subunit -
  WM46_RS19345 (WM46_19225) ilvG 3937673..3939319 (-) 1647 WP_102603066.1 acetolactate synthase 2 catalytic subunit -
  WM46_RS26520 ilvX 3939322..3939372 (-) 51 WP_193388322.1 peptide IlvX -
  WM46_RS19350 (WM46_19230) ilvL 3939459..3939557 (-) 99 WP_001311244.1 ilv operon leader peptide -
  WM46_RS19360 (WM46_19240) comM 3939911..3941431 (+) 1521 WP_102603067.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WM46_RS19365 (WM46_19245) maoP 3941457..3941795 (-) 339 WP_042326051.1 macrodomain Ori organization protein MaoP -
  WM46_RS19370 (WM46_19250) hdfR 3941915..3942748 (+) 834 WP_102603068.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55006.87 Da        Isoelectric Point: 7.1594

>NTDB_id=263706 WM46_RS19360 WP_102603067.1 3939911..3941431(+) (comM) [Citrobacter freundii complex sp. CFNIH2]
MSLSIVHTRAALGINAPAITIEVHISNGLPGLTLVGLPETTVKEARDRVRSAIINSGYDFPAKKITINLAPADLPKEGGR
YDLPIAVALLVASEQLTTHKLDQYELVGELALTGALRGVPGAISSATEAIRAGRGIIVAKENEEEVGLIEGEGCLVAEHL
QAVCAFLEGKHDLSHPVVSNETISVSSDDLSDIIGQEQGKRSLEITAAGGHNLLLVGPPGTGKTMLASRLNGLLPALSNE
EALESAAILSLVNSTSVQKLWKQRPFRSPHHSASLTAMVGGGTIPAPGEISLAHNGILFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHSRNTPEQTLRYLSRLSGPFLDRFDLSLEIPLPPPGILSQPGVKG
ESSLTVKQRVIAARERQHKRQGKLNAHLQNREIREHCPLTDEDAQWLEETLIHLGLSIRAWQRLLKVSRTIADLAQAEHI
SRRHLQEAVSYRAIDRLLAYLQKQLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=263706 WM46_RS19360 WP_102603067.1 3939911..3941431(+) (comM) [Citrobacter freundii complex sp. CFNIH2]
ATGTCACTGTCAATTGTTCATACACGCGCTGCGCTGGGTATCAATGCACCGGCGATTACTATCGAAGTGCATATCAGCAA
CGGTTTACCCGGTTTAACACTGGTGGGGTTACCAGAAACGACCGTCAAAGAGGCGCGCGACCGGGTACGCAGCGCAATCA
TTAATAGCGGATATGACTTTCCCGCAAAGAAAATCACCATCAATCTCGCCCCAGCCGATCTTCCCAAAGAGGGCGGGAGA
TATGATTTACCTATTGCTGTGGCGCTTCTGGTTGCATCTGAGCAGCTTACAACCCATAAACTCGACCAATATGAGTTAGT
GGGTGAATTAGCGCTTACAGGTGCGTTACGCGGCGTTCCCGGCGCCATATCCAGTGCAACCGAAGCGATACGGGCGGGAA
GGGGCATTATCGTGGCAAAAGAGAACGAAGAAGAAGTCGGGCTGATTGAGGGTGAAGGATGTCTGGTTGCCGAGCATCTA
CAAGCCGTCTGTGCCTTCCTGGAAGGAAAACATGACCTTAGCCATCCTGTTGTCAGCAACGAAACTATCAGTGTGTCATC
TGACGATCTCAGTGACATTATTGGTCAGGAGCAAGGGAAGCGCAGTCTTGAGATCACCGCCGCGGGTGGGCACAATCTGC
TGTTAGTTGGCCCACCGGGTACAGGGAAAACGATGCTTGCCAGCCGTCTTAATGGTCTGTTACCGGCATTAAGTAACGAA
GAAGCCCTGGAAAGCGCCGCCATCCTCAGTCTGGTTAATTCAACCAGCGTGCAAAAGTTGTGGAAACAACGACCTTTTCG
CTCACCACACCACAGCGCATCCCTGACCGCAATGGTCGGTGGTGGTACCATCCCCGCGCCAGGCGAAATTTCTTTGGCAC
ACAATGGCATACTGTTTCTTGATGAGTTACCTGAGTTTGAACGACGGACATTAGATGCTCTACGTGAACCGATAGAGTCT
GGTCAGATCCACCTTTCGCGCACGCGCGCTAAGATCACCTATCCTGCGCGCTTTCAATTGGTGGCGGCAATGAATCCCAG
TCCCACAGGTCATTATCAGGGCAACCATAGCCGCAATACGCCTGAACAGACATTACGCTATCTCAGTCGGCTATCGGGCC
CCTTTCTGGACCGCTTCGATCTTTCTCTTGAGATCCCTCTCCCGCCGCCAGGCATACTCAGCCAGCCCGGTGTAAAGGGA
GAAAGCAGCCTTACGGTTAAACAACGGGTCATTGCTGCACGGGAACGTCAGCATAAACGCCAGGGAAAACTGAATGCGCA
CCTGCAAAACAGGGAGATACGTGAGCACTGTCCGTTAACGGACGAAGACGCGCAGTGGCTTGAAGAGACACTCATCCATC
TTGGATTGTCTATACGGGCCTGGCAGCGGTTATTGAAGGTATCGAGGACTATTGCCGATCTGGCGCAAGCCGAACACATT
TCACGGAGACACTTGCAGGAAGCCGTCAGCTACCGGGCGATAGATCGACTGCTTGCTTACCTGCAGAAACAACTGACATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K9PF94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

60.198

99.802

0.601
  comM Glaesserella parasuis strain SC1401

58.546

100

0.589
  comM Haemophilus influenzae Rd KW20

58.893

100

0.589
  comM Vibrio campbellii strain DS40M4

58.218

99.802

0.581
  comM Legionella pneumophila str. Paris

47.284

98.221

0.464
  comM Legionella pneumophila strain ERS1305867

47.284

98.221

0.464
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.942

99.407

0.427

Multiple sequence alignment