Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DV446_RS05725 Genome accession   NZ_CP031252
Coordinates   1112628..1113149 (+) Length   173 a.a.
NCBI ID   WP_074897016.1    Uniprot ID   -
Organism   Neisseria elongata strain M15911     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1107628..1118149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV446_RS05700 comP 1108084..1108551 (+) 468 WP_074897003.1 type IV pilin protein Machinery gene
  DV446_RS05705 acpS 1108627..1109004 (-) 378 WP_074897006.1 holo-ACP synthase -
  DV446_RS05710 - 1109095..1109883 (-) 789 WP_074897138.1 RsiV family protein -
  DV446_RS05715 trpS 1109954..1110964 (-) 1011 WP_074897010.1 tryptophan--tRNA ligase -
  DV446_RS05720 - 1111242..1112624 (+) 1383 WP_074897013.1 MFS transporter -
  DV446_RS05725 ssb 1112628..1113149 (+) 522 WP_074897016.1 single-stranded DNA-binding protein Machinery gene
  DV446_RS05730 - 1113411..1113740 (-) 330 Protein_1102 hemagglutinin repeat-containing protein -
  DV446_RS05740 - 1114144..1114623 (-) 480 WP_074897022.1 SMI1/KNR4 family protein -
  DV446_RS05745 - 1114639..1115898 (-) 1260 WP_074897026.1 HNH endonuclease -
  DV446_RS05755 - 1115994..1116965 (+) 972 Protein_1105 IS5 family transposase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19584.66 Da        Isoelectric Point: 5.2954

>NTDB_id=263667 DV446_RS05725 WP_074897016.1 1112628..1113149(+) (ssb) [Neisseria elongata strain M15911]
MSLNKVILIGNLGRDPEVRYMPNGEAVCNFSIATSETWNDRQTGQRQERTEWHNITLYRRLAEVAGQYLRKGSQVYIEGR
IQSRKYTGKDGIERTAYDIIGSEMKMLGGRQSSGSSAPYDEGYQPVPQQQYQQQPYQAQQQPAYNSEPPAAPRRQTPAAP
AQPVDDIDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=263667 DV446_RS05725 WP_074897016.1 1112628..1113149(+) (ssb) [Neisseria elongata strain M15911]
ATGTCCCTAAACAAAGTCATCCTTATCGGCAACCTCGGCCGCGACCCCGAAGTGCGCTACATGCCCAACGGCGAGGCCGT
CTGCAACTTTTCCATCGCCACCAGCGAAACATGGAACGACCGCCAAACCGGACAGCGCCAGGAACGCACCGAATGGCACA
ACATCACCCTCTACCGCCGCTTGGCCGAAGTAGCGGGACAATACCTGAGAAAAGGCAGCCAGGTTTACATCGAAGGCCGC
ATCCAAAGCCGCAAATACACTGGTAAAGACGGCATCGAGCGCACAGCCTACGACATCATCGGCAGCGAAATGAAAATGCT
CGGCGGACGGCAAAGCAGCGGCAGCAGTGCGCCTTACGACGAAGGCTACCAGCCTGTACCGCAACAACAATATCAGCAAC
AGCCCTACCAAGCACAACAGCAGCCCGCCTACAACAGCGAGCCGCCCGCCGCGCCGCGCCGCCAAACTCCGGCCGCACCC
GCCCAGCCTGTAGATGACATCGATGACGACATCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

71.91

100

0.74
  ssb Neisseria meningitidis MC58

71.348

100

0.734
  ssb Vibrio cholerae strain A1552

51.412

100

0.526
  ssb Glaesserella parasuis strain SC1401

48.023

100

0.491