Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   DV446_RS05700 Genome accession   NZ_CP031252
Coordinates   1108084..1108551 (+) Length   155 a.a.
NCBI ID   WP_074897003.1    Uniprot ID   -
Organism   Neisseria elongata strain M15911     
Function   DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1103084..1113551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV446_RS05675 - 1103471..1103761 (-) 291 WP_074896993.1 helix-hairpin-helix domain-containing protein -
  DV446_RS05685 - 1103979..1105916 (-) 1938 WP_074896997.1 MacB family efflux pump subunit -
  DV446_RS05690 - 1106013..1107188 (-) 1176 WP_074897136.1 MacA family efflux pump subunit -
  DV446_RS05695 - 1107620..1108006 (+) 387 WP_074897000.1 type IV pilin protein -
  DV446_RS05700 comP 1108084..1108551 (+) 468 WP_074897003.1 type IV pilin protein Machinery gene
  DV446_RS05705 acpS 1108627..1109004 (-) 378 WP_074897006.1 holo-ACP synthase -
  DV446_RS05710 - 1109095..1109883 (-) 789 WP_074897138.1 RsiV family protein -
  DV446_RS05715 trpS 1109954..1110964 (-) 1011 WP_074897010.1 tryptophan--tRNA ligase -
  DV446_RS05720 - 1111242..1112624 (+) 1383 WP_074897013.1 MFS transporter -
  DV446_RS05725 ssb 1112628..1113149 (+) 522 WP_074897016.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17300.55 Da        Isoelectric Point: 8.4574

>NTDB_id=263666 DV446_RS05700 WP_074897003.1 1108084..1108551(+) (comP) [Neisseria elongata strain M15911]
MNRQYSISGFSLYEILFAVAVTAVLAAIALPAYQRYVKDARLKQAASALQNNAHALERFYAQHKSFKKNSTTWADLAVKQ
NDYFCFRMQGNARGALPDNFTVKAVALNKDSEPRVLKINQDMILTLCETSTSSCSESNTYFSNANGTDSNCIIYE

Nucleotide


Download         Length: 468 bp        

>NTDB_id=263666 DV446_RS05700 WP_074897003.1 1108084..1108551(+) (comP) [Neisseria elongata strain M15911]
ATGAATCGGCAGTATTCCATTTCCGGCTTCAGTTTGTATGAAATATTGTTTGCCGTTGCGGTGACGGCTGTTTTGGCTGC
CATTGCCCTGCCTGCCTATCAGCGTTATGTCAAAGACGCCCGATTAAAACAGGCGGCTTCGGCCTTGCAGAACAATGCAC
ATGCACTCGAACGCTTTTATGCCCAGCATAAAAGTTTTAAAAAGAATTCGACTACTTGGGCTGATTTGGCTGTCAAACAA
AATGACTATTTCTGCTTCAGGATGCAGGGAAATGCACGCGGTGCCCTTCCGGACAACTTTACCGTCAAAGCTGTCGCCTT
AAACAAAGACAGCGAACCGAGGGTATTGAAAATCAATCAGGATATGATACTGACACTCTGCGAAACCAGCACTTCTTCCT
GTTCGGAAAGCAATACTTATTTCAGCAACGCCAACGGCACCGACAGCAATTGCATCATTTATGAATGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(31-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Neisseria gonorrhoeae MS11

41.958

92.258

0.387
  comP Neisseria meningitidis 8013

40.816

94.839

0.387
  comP Neisseria subflava NJ9703

39.31

93.548

0.368