Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SFRI_RS02155 Genome accession   NC_008345
Coordinates   454911..456434 (-) Length   507 a.a.
NCBI ID   WP_011635907.1    Uniprot ID   A0A7W4BYS7
Organism   Shewanella frigidimarina NCIMB 400     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 449911..461434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SFRI_RS02145 (Sfri_0416) - 453023..453928 (-) 906 WP_011635905.1 acyltransferase -
  SFRI_RS02150 (Sfri_0417) - 453935..454831 (-) 897 WP_011635906.1 acyltransferase -
  SFRI_RS02155 (Sfri_0418) comM 454911..456434 (-) 1524 WP_011635907.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SFRI_RS02160 (Sfri_0419) - 456801..458108 (+) 1308 WP_011635908.1 hemolysin family protein -
  SFRI_RS02165 (Sfri_0420) ilvY 458141..459013 (-) 873 WP_011635909.1 HTH-type transcriptional activator IlvY -
  SFRI_RS02170 (Sfri_0421) ilvC 459222..460703 (+) 1482 WP_011635910.1 ketol-acid reductoisomerase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55422.67 Da        Isoelectric Point: 8.2134

>NTDB_id=26334 SFRI_RS02155 WP_011635907.1 454911..456434(-) (comM) [Shewanella frigidimarina NCIMB 400]
MAIACVFTRASCGVEAPRVTVEVHLSNGLPAFNLVGLPETSVKEAKERVRSALINAGFEFPQKRITVNLAPADLPKQGGR
YDLPIAVGILAASNQVPAKALHQCEFVGELALSGQIRPCSGLLPAIIAARNDQHHFFMPIENRHEAELVGYKHSYFVAHL
QNLAAFLHGQAQLPLLDTLPEWIEEEIQAQSSLCMSDVIGQYQAKHGLEIAAAGGHNMLFIGPPGTGKSMLANRIIPLLP
KLTYDEAIEVAAIHSVAGLHVKPQNFLNRPFRSPHHTSSSIALIGGGSHPKPGEISLAHRGILFLDEIAEFPRKVLDCLR
EPLETGQVEISRAAAKLTFLSRFQLIAAMNPSPCGDTERARSTPDQIQRYLSRLSGPFLDRFDLTVDVPKLPAGTLTQQH
QPSESSVEIAKRVKQARDLQLSRSGVLNSELTPKQLKQDGAITQPDLAFLEQSVVSLGLSVRSFHRIQRVSRTIADLQQS
PTTERSHIAQALGYRAMDRLLAKLNQQ

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=26334 SFRI_RS02155 WP_011635907.1 454911..456434(-) (comM) [Shewanella frigidimarina NCIMB 400]
ATGGCGATAGCCTGTGTATTTACTCGAGCAAGTTGCGGTGTAGAAGCGCCAAGAGTCACTGTTGAAGTTCATCTAAGCAA
CGGTTTACCCGCATTTAATCTAGTGGGGCTACCGGAAACCTCAGTTAAAGAAGCCAAAGAGCGTGTCAGAAGTGCGTTGA
TTAATGCAGGATTTGAATTCCCTCAGAAAAGAATTACCGTCAACCTGGCCCCAGCAGATTTACCAAAACAAGGTGGCCGC
TATGATTTGCCTATTGCAGTCGGTATTCTCGCCGCATCAAATCAAGTTCCAGCTAAAGCATTGCACCAATGCGAATTTGT
GGGTGAGCTGGCTCTTTCTGGGCAAATTCGCCCTTGCAGTGGATTATTACCAGCCATTATTGCCGCGCGCAATGATCAGC
ACCATTTTTTTATGCCCATCGAAAACCGCCATGAAGCAGAGCTCGTTGGCTATAAGCACAGTTATTTTGTCGCCCACTTA
CAAAACTTAGCGGCATTTTTACATGGCCAAGCACAATTACCGTTACTCGACACCTTGCCCGAATGGATTGAAGAAGAAAT
TCAAGCGCAATCATCGCTGTGCATGAGCGATGTCATTGGCCAATATCAGGCCAAACACGGGCTTGAAATCGCCGCGGCCG
GAGGACATAACATGTTGTTTATTGGCCCCCCAGGGACGGGGAAAAGTATGTTAGCCAATCGAATTATCCCATTACTGCCA
AAACTTACCTACGACGAAGCCATTGAAGTAGCCGCCATTCATTCTGTCGCTGGATTACATGTAAAACCGCAAAACTTCCT
TAATCGCCCTTTTCGCTCGCCGCACCATACATCATCATCTATTGCACTGATTGGTGGCGGCAGCCATCCCAAACCAGGTG
AGATATCATTAGCGCATCGTGGGATATTATTTCTTGATGAAATAGCAGAATTTCCTCGTAAGGTACTGGATTGTCTGCGT
GAGCCTTTAGAAACTGGCCAAGTAGAGATTTCTCGAGCCGCAGCAAAATTGACCTTTTTAAGTCGATTTCAACTCATTGC
CGCCATGAACCCAAGCCCTTGCGGTGATACGGAGCGAGCACGTTCGACCCCAGATCAAATTCAGCGTTACTTATCGCGCT
TATCGGGGCCTTTTTTAGACCGCTTCGATTTAACCGTTGATGTTCCCAAACTTCCTGCAGGTACGTTAACCCAACAACAC
CAGCCCAGTGAGTCTAGCGTTGAAATAGCTAAGCGAGTCAAGCAAGCACGCGATCTACAACTCAGCCGTTCTGGTGTATT
AAACAGTGAGTTAACCCCAAAACAACTCAAACAAGATGGCGCGATTACTCAGCCAGATCTGGCTTTTTTGGAACAAAGTG
TCGTGAGCTTAGGGTTGTCAGTACGTAGTTTTCATCGTATTCAACGGGTATCACGCACCATTGCCGACTTGCAGCAATCC
CCTACTACCGAGCGCAGTCACATTGCTCAAGCCCTTGGTTATCGGGCCATGGACCGATTACTGGCAAAATTGAATCAGCA
ATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(195-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7W4BYS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.42

100

0.546
  comM Haemophilus influenzae Rd KW20

54.241

100

0.542
  comM Vibrio cholerae strain A1552

53.831

100

0.54
  comM Glaesserella parasuis strain SC1401

53.846

100

0.538
  comM Legionella pneumophila str. Paris

46.2

98.619

0.456
  comM Legionella pneumophila strain ERS1305867

46.2

98.619

0.456
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.053

100

0.434

Multiple sequence alignment