Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NEUT_RS12065 Genome accession   NC_008344
Coordinates   2493389..2494888 (+) Length   499 a.a.
NCBI ID   WP_011635359.1    Uniprot ID   Q0ADJ1
Organism   Nitrosomonas eutropha C91     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2488389..2499888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NEUT_RS12040 (Neut_2372) - 2488806..2489672 (+) 867 WP_041353587.1 YicC/YloC family endoribonuclease -
  NEUT_RS12045 (Neut_2373) - 2489766..2490848 (-) 1083 WP_041353588.1 tellurite resistance/C4-dicarboxylate transporter family protein -
  NEUT_RS12050 (Neut_2374) murU 2491112..2491837 (-) 726 WP_011635356.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  NEUT_RS12055 (Neut_2375) - 2491852..2492850 (-) 999 WP_011635357.1 phosphotransferase -
  NEUT_RS12060 (Neut_2376) - 2493015..2493323 (+) 309 WP_011635358.1 accessory factor UbiK family protein -
  NEUT_RS12065 (Neut_2377) comM 2493389..2494888 (+) 1500 WP_011635359.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NEUT_RS12070 (Neut_2378) dnaB 2494907..2496304 (-) 1398 WP_011635360.1 replicative DNA helicase -
  NEUT_RS12075 (Neut_2379) rplI 2496410..2496865 (-) 456 WP_011635361.1 50S ribosomal protein L9 -
  NEUT_RS12080 (Neut_2380) rpsR 2496884..2497114 (-) 231 WP_204987598.1 30S ribosomal protein S18 -
  NEUT_RS12085 (Neut_2381) priB 2497204..2497512 (-) 309 WP_011635363.1 primosomal replication protein N -
  NEUT_RS12090 (Neut_2382) rpsF 2497514..2497948 (-) 435 WP_011635364.1 30S ribosomal protein S6 -
  NEUT_RS14815 - 2498544..2498702 (-) 159 WP_160803593.1 hypothetical protein -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 54494.95 Da        Isoelectric Point: 9.8247

>NTDB_id=26331 NEUT_RS12065 WP_011635359.1 2493389..2494888(+) (comM) [Nitrosomonas eutropha C91]
MSLAILYSRALCGVDAPLVTVEVHLANGLPKFTIVGLPETEVRESKDRVRAALQNGRFKFPARRITVNLAPADLPKESGR
FDLPIALGILAATGQIPANKLDQYEWAGELSLDGRLRPIRGALAMTYSASRSGRSFVLPEQNAGEAALVKEATIYPAASL
LQLCAYLTGQEPWQPYRGGSAELESNDYPDMGDVKGQMQARRALEIAAAGGHSVLMIGPPGTGKTMLAKRIPGILPPMTG
QEALESAAIQSLGSGSFDLANWKRRPFRSPHHTASAVALVGGGSIPRPGEISLAMHGVLFLDELPEFDRRVLEVLREPLE
SGHITISRAARRADFPARFQLIAAMNPCPCGYLGHYTNKCRCTPDQVARYRGKVSGPLLDRIDIQIEVPALPKEDMLRPG
PGESSAVIRERTLVARQRQLNRQHVPNTRLGVQEIEKYCVLDAEGKRMLERAMTHLNISARAYHRILKLARTIADLSGSK
PILGKHVAEAIQYRRMGIN

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=26331 NEUT_RS12065 WP_011635359.1 2493389..2494888(+) (comM) [Nitrosomonas eutropha C91]
ATGTCTCTGGCTATTCTGTATAGCCGTGCATTGTGTGGAGTGGACGCGCCGCTAGTGACCGTAGAGGTGCATCTTGCTAA
CGGTTTACCAAAATTTACTATCGTTGGGCTTCCGGAAACGGAAGTCAGGGAAAGTAAAGACAGGGTGCGCGCCGCACTGC
AGAATGGACGATTCAAATTTCCTGCCCGGCGTATTACGGTTAATCTTGCACCGGCTGATTTACCCAAGGAAAGCGGGCGT
TTCGATTTGCCTATCGCGCTGGGCATCTTAGCGGCAACCGGGCAGATTCCTGCAAATAAACTCGATCAGTATGAATGGGC
AGGGGAGTTGTCTCTTGATGGTCGCCTGCGCCCGATTCGTGGCGCACTGGCCATGACTTACAGTGCCTCCCGTTCAGGCC
GCAGTTTCGTTTTGCCAGAGCAAAATGCCGGCGAAGCAGCACTGGTCAAAGAGGCGACTATCTATCCTGCTGCTTCGCTG
CTGCAGCTGTGTGCATATCTGACTGGGCAGGAGCCATGGCAACCTTATCGTGGTGGATCGGCTGAGTTAGAATCAAATGA
TTATCCGGACATGGGAGATGTCAAAGGGCAGATGCAGGCCAGGCGCGCGTTGGAGATCGCTGCTGCAGGTGGACACAGTG
TGCTGATGATTGGCCCACCGGGCACGGGAAAAACCATGTTAGCCAAGCGTATCCCGGGAATTTTGCCGCCCATGACCGGA
CAGGAGGCGCTGGAATCGGCTGCCATTCAATCTTTGGGGAGTGGCAGTTTTGATCTGGCTAACTGGAAGCGTCGCCCGTT
TCGGTCACCCCATCATACTGCCTCGGCCGTGGCATTGGTGGGTGGGGGCAGTATTCCACGCCCGGGTGAGATTTCACTGG
CCATGCATGGAGTGCTGTTTCTTGATGAGTTACCCGAATTTGATCGGCGGGTTCTGGAGGTGCTGCGTGAACCGCTTGAA
TCCGGTCACATTACCATTTCACGCGCTGCACGCCGAGCAGATTTTCCAGCCAGATTTCAACTTATTGCTGCAATGAACCC
ATGTCCATGCGGGTATTTGGGGCATTACACCAATAAATGTCGTTGTACACCTGATCAGGTAGCGCGTTATCGTGGCAAGG
TTTCCGGTCCGTTGCTGGATCGAATCGATATTCAGATTGAAGTCCCTGCTTTGCCGAAGGAGGATATGTTGCGCCCCGGT
CCGGGTGAATCCAGCGCTGTTATTCGAGAACGAACGTTGGTTGCCCGGCAACGTCAGTTAAATCGTCAACACGTACCCAA
TACGAGGTTAGGGGTGCAGGAAATTGAAAAATATTGTGTTCTGGATGCGGAGGGGAAGCGTATGCTGGAACGAGCCATGA
CCCATTTGAATATCTCAGCACGGGCTTATCACAGAATACTGAAGCTGGCTCGAACCATTGCAGATTTGTCAGGCAGTAAA
CCTATTTTGGGAAAGCATGTGGCGGAAGCTATTCAGTACCGCCGTATGGGTATAAATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0ADJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.131

99.599

0.549
  comM Vibrio campbellii strain DS40M4

55.02

99.8

0.549
  comM Haemophilus influenzae Rd KW20

54.183

100

0.545
  comM Glaesserella parasuis strain SC1401

53.892

100

0.541
  comM Legionella pneumophila str. Paris

50.302

99.599

0.501
  comM Legionella pneumophila strain ERS1305867

50.302

99.599

0.501
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

48.214

100

0.487

Multiple sequence alignment