Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C0099_RS14430 Genome accession   NZ_CP025682
Coordinates   2946640..2948148 (-) Length   502 a.a.
NCBI ID   WP_102248073.1    Uniprot ID   A0A2I6S9W0
Organism   Pseudazoarcus pumilus strain SY39     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2941640..2953148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0099_RS14410 (C0099_14410) - 2942221..2943015 (+) 795 WP_102248069.1 phosphonate ABC transporter ATP-binding protein -
  C0099_RS14415 (C0099_14415) - 2943012..2944787 (+) 1776 WP_102248070.1 ABC transporter permease -
  C0099_RS14420 (C0099_14420) - 2944855..2945247 (+) 393 WP_102248071.1 rhodanese-like domain-containing protein -
  C0099_RS14425 (C0099_14425) - 2945365..2946555 (-) 1191 WP_102248072.1 multidrug effflux MFS transporter -
  C0099_RS14430 (C0099_14430) comM 2946640..2948148 (-) 1509 WP_102248073.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C0099_RS14435 (C0099_14435) - 2948312..2949616 (+) 1305 WP_102248074.1 YjgN family protein -
  C0099_RS14440 (C0099_14440) - 2949616..2950635 (+) 1020 WP_102248075.1 M48 family metallopeptidase -
  C0099_RS14445 (C0099_14445) - 2950960..2951970 (+) 1011 WP_102248076.1 TRAP transporter substrate-binding protein -
  C0099_RS14450 (C0099_14450) - 2952035..2952538 (+) 504 WP_102248077.1 TRAP transporter small permease -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 52762.59 Da        Isoelectric Point: 7.9540

>NTDB_id=263231 C0099_RS14430 WP_102248073.1 2946640..2948148(-) (comM) [Pseudazoarcus pumilus strain SY39]
MSLAIVHTRALCGLEASPVTVEVHLANGLPAFNLVGLPDAEVREARDRVRAALAVAQFDFPQRRITVNLAPADLPKEGGA
FDLPIALGILAASGQIRVEALDGHEFVGELSLDARLRPVRGALAIALAAAADGHALVVPAANADEAALARAASVLPANSL
LEVCAHLEARSEILPHVRREAAAPDAAMPDLADIKGQLRARRALEVAAAGAHSVLLFGPPGTGKSMLAQRLPGLLPPMSE
DEAVASAAVQSIEGGFDPTCWHRRPFRAPHHSASAPALVGGGSVPRPGEISLAHHGVLFLDELPEFDRRVLEALREPLET
GRITVSRAGRRAEFPARFQLVAAMNPCPCGYHGASGSRCRCTPERIARYLGKLSGPLLDRIDLVVEVPALEPAELATAAP
GESSAVVATRVLAARARQSERQGGVNAALAPRAIERHCTPDAAARKLLEDAAAGLGLSARGYHRLLKVARSIADLAGQER
VGVAHVAEAVTYRRALDLRRRG

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=263231 C0099_RS14430 WP_102248073.1 2946640..2948148(-) (comM) [Pseudazoarcus pumilus strain SY39]
ATGTCGCTGGCCATCGTCCATACCCGTGCCTTGTGCGGGCTGGAAGCCTCTCCGGTCACCGTCGAGGTGCATCTGGCCAA
CGGTCTGCCGGCCTTCAATCTGGTCGGTCTGCCCGATGCCGAGGTGCGCGAGGCACGCGACCGCGTGCGTGCGGCCCTGG
CCGTGGCGCAGTTCGATTTTCCGCAGCGGCGCATCACCGTCAATCTCGCGCCGGCCGATCTGCCCAAGGAAGGCGGCGCC
TTCGATCTGCCCATCGCACTGGGGATTCTCGCCGCGTCGGGGCAGATCCGCGTCGAGGCGCTCGACGGACACGAGTTCGT
CGGCGAACTCTCGCTCGATGCGCGCCTGCGACCGGTGCGCGGCGCGCTGGCCATTGCGTTGGCGGCGGCCGCAGACGGCC
ACGCCCTGGTCGTGCCCGCCGCCAATGCCGACGAGGCCGCGCTCGCCCGCGCCGCCAGCGTGCTGCCGGCCAATAGCCTG
CTCGAAGTGTGCGCGCATCTCGAGGCGCGCTCTGAAATCCTGCCGCATGTGCGTCGCGAGGCGGCCGCGCCCGACGCCGC
GATGCCCGACCTGGCCGACATCAAGGGCCAGCTGCGTGCGCGTCGCGCGCTCGAGGTGGCCGCGGCCGGCGCGCATTCGG
TGCTGCTGTTCGGTCCGCCCGGGACCGGCAAGTCCATGCTCGCCCAGCGCCTGCCTGGCTTGCTGCCGCCGATGAGCGAG
GACGAGGCGGTCGCCAGTGCGGCGGTGCAGTCCATCGAGGGTGGCTTCGATCCGACCTGCTGGCATCGTCGGCCGTTTCG
CGCACCGCATCACTCGGCCTCGGCGCCGGCGCTGGTGGGAGGCGGCAGCGTACCGCGTCCGGGCGAGATCAGCCTCGCCC
ACCATGGCGTGCTGTTTCTCGACGAGTTGCCCGAATTCGACCGACGCGTTCTCGAGGCCCTGCGCGAGCCGCTCGAAACT
GGTCGCATCACCGTCTCGCGCGCTGGCCGGCGCGCGGAATTCCCCGCCCGCTTCCAGCTCGTCGCGGCGATGAACCCGTG
CCCCTGCGGCTACCACGGTGCATCGGGCAGCCGCTGCCGGTGCACGCCCGAGCGCATCGCGCGCTATCTGGGCAAGCTGT
CCGGGCCGCTGCTCGATCGCATCGATCTGGTGGTCGAGGTGCCCGCACTGGAGCCGGCCGAGCTGGCCACGGCCGCGCCC
GGCGAGTCCAGCGCGGTCGTGGCCACGCGCGTGCTTGCGGCGCGCGCTCGCCAGAGCGAGCGGCAGGGCGGCGTCAACGC
AGCACTCGCGCCGCGCGCGATCGAACGCCACTGCACGCCGGACGCGGCCGCCCGCAAGCTGCTCGAAGATGCCGCCGCCG
GCCTGGGGCTGTCGGCGCGTGGCTATCATCGTTTGCTCAAGGTCGCGCGCAGCATCGCCGATCTGGCCGGGCAGGAACGG
GTGGGTGTGGCCCATGTCGCCGAGGCCGTGACCTACCGGCGTGCGCTCGACCTTCGTCGTCGCGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I6S9W0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.709

99.402

0.544
  comM Vibrio campbellii strain DS40M4

54.709

99.402

0.544
  comM Haemophilus influenzae Rd KW20

53.15

100

0.538
  comM Glaesserella parasuis strain SC1401

52.381

100

0.526
  comM Legionella pneumophila str. Paris

50.888

100

0.514
  comM Legionella pneumophila strain ERS1305867

50.888

100

0.514
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.862

100

0.452

Multiple sequence alignment