Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C0099_RS03160 Genome accession   NZ_CP025682
Coordinates   655095..655586 (+) Length   163 a.a.
NCBI ID   WP_102246104.1    Uniprot ID   A0A2I6S458
Organism   Pseudazoarcus pumilus strain SY39     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 650095..660586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0099_RS03140 (C0099_03140) - 650118..650504 (+) 387 WP_228151636.1 DUF2237 family protein -
  C0099_RS03145 (C0099_03145) - 650514..650813 (-) 300 WP_102246101.1 hypothetical protein -
  C0099_RS03150 (C0099_03150) uvrA 650868..653723 (-) 2856 WP_102246102.1 excinuclease ABC subunit UvrA -
  C0099_RS03155 (C0099_03155) - 653861..655084 (+) 1224 WP_228151637.1 MFS transporter -
  C0099_RS03160 (C0099_03160) ssb 655095..655586 (+) 492 WP_102246104.1 single-stranded DNA-binding protein Machinery gene
  C0099_RS03165 (C0099_03165) - 655588..656736 (-) 1149 WP_102246105.1 MalY/PatB family protein -
  C0099_RS03170 (C0099_03170) - 656817..657776 (+) 960 WP_102246106.1 MBL fold metallo-hydrolase -
  C0099_RS03175 (C0099_03175) - 657773..658567 (+) 795 WP_102246107.1 ThiF family adenylyltransferase -
  C0099_RS03180 (C0099_03180) - 658564..658962 (+) 399 WP_102246108.1 sirohydrochlorin chelatase -
  C0099_RS03185 (C0099_03185) - 658995..659303 (+) 309 WP_173768945.1 PilZ domain-containing protein -
  C0099_RS03190 (C0099_03190) - 659293..659817 (-) 525 WP_102246110.1 disulfide bond formation protein B -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18059.14 Da        Isoelectric Point: 5.9703

>NTDB_id=263216 C0099_RS03160 WP_102246104.1 655095..655586(+) (ssb) [Pseudazoarcus pumilus strain SY39]
MASLNKVILIGNLGRDPETRYMPSGDALCNLRIATTDTWKDKTSGERREATEWHNVVMFGRLAEIAAQYLRKGSQIYIEG
RLQTRKWQDKEGQDRYTTEIRADEMKMLGGRPSGGDAPMGRQDTGGGYDEAPPRPQQRPAPQPAGGKPAESGGFGNFDDD
IPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=263216 C0099_RS03160 WP_102246104.1 655095..655586(+) (ssb) [Pseudazoarcus pumilus strain SY39]
ATGGCATCCCTGAACAAAGTCATTCTGATCGGCAACCTGGGGCGCGATCCGGAAACGCGCTACATGCCCAGCGGCGACGC
CCTGTGCAATCTGCGCATCGCGACCACCGACACCTGGAAGGACAAGACCAGCGGCGAGCGCCGCGAGGCGACCGAATGGC
ACAACGTGGTGATGTTCGGGCGTCTGGCCGAGATCGCCGCGCAGTACCTGCGCAAGGGCAGTCAGATCTACATCGAGGGC
CGTCTGCAGACGCGCAAGTGGCAGGACAAGGAAGGCCAGGACCGCTACACCACCGAGATCCGCGCCGACGAGATGAAGAT
GCTCGGCGGACGTCCCTCGGGCGGTGACGCGCCGATGGGTCGGCAGGACACCGGCGGTGGCTACGACGAGGCACCGCCGC
GTCCGCAGCAGCGCCCCGCGCCGCAACCGGCCGGCGGCAAGCCAGCCGAGAGTGGCGGTTTTGGCAATTTCGACGACGAT
ATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I6S458

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.809

100

0.577
  ssb Glaesserella parasuis strain SC1401

49.733

100

0.571
  ssb Neisseria gonorrhoeae MS11

49.727

100

0.558
  ssb Neisseria meningitidis MC58

49.444

100

0.546

Multiple sequence alignment