Detailed information NTG0263151

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: C0058_RS31560
• Genome accession: NZ_CP025624
• Coordinates: 6678461..6679957 (+)
• Length: 498 a.a.
• NCBI ID: WP_102370153.1
• Uniprot ID: -
• Organism: Pseudomonas sp. NC02
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 6673461..6684957

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C0058_RS31535 (C0058_31540)	-	6673660..6675000 (-)	1341	WP_008439352.1	ammonium transporter	-
C0058_RS31540 (C0058_31545)	glnK	6675035..6675373 (-)	339	WP_002555808.1	P-II family nitrogen regulator	-
C0058_RS31545 (C0058_31550)	-	6675847..6676056 (+)	210	WP_371857034.1	accessory factor UbiK family protein	-
C0058_RS31550 (C0058_31555)	cfa	6676109..6677191 (-)	1083	WP_003208781.1	cyclopropane fatty acyl phospholipid synthase	-
C0058_RS31555 (C0058_31560)	-	6677455..6678363 (+)	909	WP_102370152.1	LysR family transcriptional regulator	-
C0058_RS31560 (C0058_31565)	comM	6678461..6679957 (+)	1497	WP_102370153.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
C0058_RS31565 (C0058_31570)	-	6679944..6680528 (-)	585	WP_102370154.1	TetR/AcrR family transcriptional regulator	-
C0058_RS31570 (C0058_31575)	-	6680644..6681567 (+)	924	WP_102370155.1	ABC transporter six-transmembrane domain-containing protein	-
C0058_RS31575 (C0058_31580)	-	6681685..6683661 (-)	1977	WP_008439409.1	methyl-accepting chemotaxis protein	-
C0058_RS31580 (C0058_31585)	-	6683840..6684760 (-)	921	WP_003208769.1	LysR substrate-binding domain-containing protein	-

Sequence

Protein

• Length: 498 a.a.
• Molecular weight: 53297.60 Da
• Isoelectric Point: 8.5858

>NTDB_id=263151 C0058_RS31560 WP_102370153.1 6678461..6679957(+) (comM) [Pseudomonas sp. NC02]
MSLAIVHSRAQIGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPSRRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPALTLDNVECLGELALSGEVRPVKGVLPAALAARKVGRTLIVPRANAEEACLASGLKVIAVDHL
LQVVAHLNGHVPIEPFVSSGLMYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSLAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVRFPARFQLVAAMNPCPCSYVGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHVTVARESTALNPGIQS
GDDTASASVLVADARDRQQRRQGCANAFLDLPGLRQHCKLKKADEGWLESACERLTLSLRAAHRLLKVARTLADLEQVEA
IARHHLAEALQYRPASAS

Nucleotide

• Length: 1497 bp

>NTDB_id=263151 C0058_RS31560 WP_102370153.1 6678461..6679957(+) (comM) [Pseudomonas sp. NC02]
ATGTCCCTCGCCATCGTCCACAGCCGCGCCCAGATAGGCGTCGAAGCGCCCGCCGTCACTGTCGAGGTGCACATGGCCAA
CGGCTTGCCGTCGCTGACGCTGGTGGGCCTGCCGGAAACCGCCGTCAAGGAAAGCAAAGACCGCGTGCGCAGTGCGATCC
TCAACTCTGCGCTGCAATACCCGTCCCGTCGCATCACCCTCAACCTCGCGCCCGCCGACCTCCCCAAGGACGGCGGGCGC
TTTGATTTGGCGATTGCCCTGGGGATTCTCGCCGCCAGCGTGCAGGTACCGGCGCTGACCCTCGATAACGTGGAATGCCT
GGGCGAGCTGGCGCTGTCCGGCGAGGTGCGGCCGGTGAAAGGTGTGTTGCCGGCAGCCCTGGCGGCGCGCAAGGTCGGGC
GCACCTTGATCGTGCCACGGGCCAATGCCGAGGAAGCCTGCCTGGCTTCGGGGTTGAAGGTGATTGCCGTGGATCACCTG
CTGCAAGTGGTGGCGCACCTGAACGGTCACGTGCCGATCGAGCCCTTCGTTTCCAGTGGCCTGATGTACTTGAACAAACC
CTACCCCGACCTGAGTGAAGTGCAGGGCCAACTGGCGGCCAAGCGTGCGCTGTTGATCGCTGCGGCGGGCGCCCACAACC
TGTTGCTCAGCGGGCCACCGGGCACCGGCAAGACCTTGCTCGCCAGCCGTCTGCCGGGGTTGTTGCCGCCCTTGAGTGAA
CAGGAAGCACTGGAGGTGGCGGCGATTCAATCGGTGGTCAGCCTGGCGCCGCTGAGCCATTGGCCACACCGGCCATTTCG
CCAGCCGCATCATTCGGCATCCGGCCCGGCGCTGGTGGGCGGCGGCTCGAAACCGCAGCCGGGGGAAATAACCCTGGCCC
ATCACGGTGTGTTGTTTCTCGACGAGTTGCCGGAGTTTGATCGCAAGGTCCTGGAGGTGCTGCGTGAGCCGCTGGAGTCC
GGGCATATCGTGATTTCCCGCGCTCGCGACCGGGTGCGTTTCCCGGCGCGCTTTCAGTTGGTGGCGGCAATGAACCCCTG
CCCTTGCAGCTATGTGGGCGAGCCCAGTGGGCGCTGTCGCTGCACGCCGGAGCAGATTCAGCGCTATCGCAACAAACTCT
CGGGGCCGCTGCTGGACCGGATTGACCTGCACGTGACCGTCGCCCGGGAAAGCACCGCGCTGAACCCGGGCATACAGTCC
GGTGATGACACCGCCAGCGCCTCCGTCCTCGTCGCCGATGCCCGGGACCGCCAACAACGGCGCCAGGGCTGCGCCAATGC
GTTTCTCGACCTGCCGGGGCTACGCCAGCACTGCAAACTGAAAAAGGCTGATGAAGGCTGGCTGGAAAGCGCCTGCGAAC
GGCTGACGCTGTCGTTGCGGGCAGCCCATCGCCTGCTCAAGGTCGCCCGCACCCTGGCCGACCTGGAACAAGTGGAAGCC
ATCGCCCGCCATCATCTGGCGGAGGCCTTGCAGTACCGCCCTGCTAGCGCGTCCTAG

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-391)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (404-493)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	57.172	99.398	0.568
comM	Vibrio campbellii strain DS40M4	56.162	99.398	0.558
comM	Glaesserella parasuis strain SC1401	55.09	100	0.554
comM	Haemophilus influenzae Rd KW20	54.491	100	0.548
comM	Legionella pneumophila str. Paris	51.008	99.598	0.508
comM	Legionella pneumophila strain ERS1305867	51.008	99.598	0.508
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	46.123	100	0.466