Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C0L89_RS20140 Genome accession   NZ_CP025609
Coordinates   4216872..4218392 (+) Length   506 a.a.
NCBI ID   WP_024743696.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzae strain MAI1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 4218473..4219271 4216872..4218392 flank 81


Gene organization within MGE regions


Location: 4216872..4219271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0L89_RS20140 (C0L89_20130) comM 4216872..4218392 (+) 1521 WP_024743696.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C0L89_RS20145 (C0L89_20135) - 4219000..4219001 (-) 2 WP_101807261.1 IS5 family transposase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54059.91 Da        Isoelectric Point: 8.4375

>NTDB_id=263000 C0L89_RS20140 WP_024743696.1 4216872..4218392(+) (comM) [Xanthomonas oryzae pv. oryzae strain MAI1]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQMVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKEGGR
FDLPIALGILAASGQIDRQALTDYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVEAFTARTL
LEVCATLDGSQKAPAAKLVVQALGARALPDMADVRGQPHARRALEIAAAGGHHLLLIGSPGCGKTLLASRLPGLLPEASE
AEALETAAITSTSGRGLDLARWRQRPYRAPHHTASAVALVGGGTLPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGLVTISRAARSVDFPARFQLVAAMNPCPCGWAGDGSGRCRCSNDSIRRYRSRISGPLLDRIDLHVEVPRLPPQALRSGN
LGEDSASVRCRVVAARQRQLARGALPNAQLDQPDTDRHCRLQHDDQVLLERAIEHLQLSARSMHRILRVARTIADLDDSA
DIATRHLTEAIGYRKLDRALSAASAG

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=263000 C0L89_RS20140 WP_024743696.1 4216872..4218392(+) (comM) [Xanthomonas oryzae pv. oryzae strain MAI1]
ATGAGTCTGGCGTTGGTGCACAGCCGTGCCCGCGTGGGGGTGCACGCGCCCGAAGTTCGGGTGGAAGTGCATCTCTCCGG
CGGTCTCCCCTCCACCCAGATGGTGGGCCTGCCCGAAGCGGCAGTGCGCGAATCGCGCGAACGCGTACGTGCCGCGCTGC
TGTGCGCGCAGTTCGAATTCCCCGCACGGCGCATTACCATCAATCTGGCCCCGGCCGATCTGCCTAAGGAAGGCGGACGG
TTCGATTTGCCGATCGCCCTCGGCATCCTGGCTGCCAGCGGGCAAATCGACCGCCAGGCCCTGACCGATTACGAATTCCT
CGGCGAGCTTGCGCTTACCGGCGAGCTGCGCGGCATCGATGGCGTGCTGCCCGCGGCGCTGGCGGCCGCGCAGGCAGGGC
GACGGCTGATCGTGCCGCTTGCCAACGGTGCCGAAGCCGCGATTGCCGGGCACGTCGAAGCCTTCACCGCACGCACGCTG
CTTGAGGTGTGCGCTACGCTCGACGGCAGCCAGAAAGCACCTGCCGCCAAATTGGTGGTGCAGGCGCTCGGCGCCCGTGC
CCTGCCCGACATGGCCGATGTGCGCGGGCAACCGCACGCCCGCCGCGCGCTGGAGATCGCCGCTGCCGGTGGGCATCATC
TCCTTCTGATCGGCAGCCCTGGCTGCGGCAAGACCCTGTTGGCCTCGCGCCTGCCTGGGCTATTGCCCGAAGCCAGCGAA
GCCGAAGCGCTGGAAACCGCGGCCATTACCTCCACCAGCGGCCGCGGACTGGATCTGGCCCGCTGGCGGCAGCGGCCCTA
CCGGGCTCCTCACCACACCGCCAGCGCAGTCGCCTTGGTTGGCGGTGGCACGCTTCCGCGCCCCGGCGAGATCTCGCTGG
CCCACAACGGTGTCTTGTTTCTGGACGAGTTGCCCGAGTGGCAACGGCAGACACTCGAGGTGCTGCGCGAGCCGTTGGAA
TCGGGTCTGGTCACGATCTCACGCGCGGCGCGCAGCGTCGACTTCCCTGCACGCTTCCAGCTGGTCGCTGCGATGAACCC
ATGCCCATGCGGTTGGGCAGGCGACGGCAGCGGGCGCTGCCGCTGCAGCAACGACAGCATCCGCCGCTATCGCAGCCGTA
TCTCCGGCCCGTTGCTGGACCGCATCGATCTGCATGTCGAAGTGCCACGCCTACCACCGCAAGCGCTGCGTAGCGGCAAC
CTCGGCGAGGACAGCGCCAGCGTGCGTTGCCGCGTGGTCGCCGCGCGGCAACGCCAGCTTGCGCGCGGAGCGCTGCCCAA
TGCGCAACTGGATCAGCCCGACACCGACCGCCATTGCCGTCTGCAGCACGACGACCAAGTGCTGCTCGAGCGCGCCATCG
AACACCTGCAGCTGTCTGCGCGCTCGATGCATCGCATCCTGCGCGTGGCACGCACCATCGCCGATCTCGACGACAGCGCG
GACATTGCCACGCGCCATCTCACCGAAGCGATCGGCTATCGCAAACTGGATCGCGCACTGAGTGCCGCCAGCGCGGGGTA
G

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.641

100

0.573
  comM Haemophilus influenzae Rd KW20

54.314

100

0.547
  comM Vibrio campbellii strain DS40M4

54.314

100

0.547
  comM Glaesserella parasuis strain SC1401

54.043

100

0.541
  comM Legionella pneumophila str. Paris

50.884

100

0.512
  comM Legionella pneumophila strain ERS1305867

50.884

100

0.512
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.85

100

0.459

Multiple sequence alignment