Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   DK885_RS18520 Genome accession   NZ_CP031214
Coordinates   3565396..3565872 (-) Length   158 a.a.
NCBI ID   WP_000811693.1    Uniprot ID   A0AA91EE93
Organism   Escherichia coli strain C600     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3560396..3570872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK885_RS18490 (DK885_18490) proB 3561528..3562631 (+) 1104 WP_001285288.1 glutamate 5-kinase -
  DK885_RS18495 (DK885_18495) proA 3562643..3563896 (+) 1254 WP_000893278.1 glutamate-5-semialdehyde dehydrogenase -
  DK885_RS18505 (DK885_18505) ykfI 3564468..3564809 (-) 342 WP_000854672.1 type IV toxin-antitoxin system toxin YkfI -
  DK885_RS18510 (DK885_18510) yafW 3564830..3565147 (-) 318 WP_000070395.1 type IV toxin-antitoxin system antitoxin YafW -
  DK885_RS18515 (DK885_18515) ykfH 3565166..3565387 (-) 222 WP_000691994.1 DUF987 domain-containing protein -
  DK885_RS18520 (DK885_18520) radC 3565396..3565872 (-) 477 WP_000811693.1 RadC family protein Machinery gene
  DK885_RS18525 (DK885_18525) yafX 3565888..3566346 (-) 459 WP_000211838.1 antirestriction protein -
  DK885_RS18530 (DK885_18530) ykfF 3566444..3566683 (-) 240 WP_000194654.1 DUF905 family protein -
  DK885_RS18535 (DK885_18535) ykfB 3566760..3567227 (-) 468 WP_001547765.1 protein YkfB -
  DK885_RS18540 (DK885_18540) yafY 3567250..3567693 (-) 444 WP_000824223.1 YfjS/YafY family lipoprotein -
  DK885_RS18545 (DK885_18545) ypjK 3567693..3567920 (-) 228 WP_001548158.1 protein YpjK -
  DK885_RS18550 (DK885_18550) - 3567916..3568107 (-) 192 Protein_3419 DeoR family transcriptional regulator -
  DK885_RS18555 (DK885_18555) yafZ 3568324..3569145 (-) 822 WP_000197389.1 DUF932 domain-containing protein -
  DK885_RS18560 (DK885_18560) ykfA 3569237..3570100 (-) 864 WP_001065553.1 GTPase family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18098.78 Da        Isoelectric Point: 8.7508

>NTDB_id=262473 DK885_RS18520 WP_000811693.1 3565396..3565872(-) (radC) [Escherichia coli strain C600]
MKQLSFLPGEMTPQDRRLIQRALRALDRHLHEPGVAFTSTHAVREWLRLHMAALEREEFRVLYLDNQNQLIAHETLFTGT
INRTEVHPREVVKRALHFNAAAVILAHNHPSGETTPSQADKTLTQRLVQVLQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=262473 DK885_RS18520 WP_000811693.1 3565396..3565872(-) (radC) [Escherichia coli strain C600]
ATGAAACAGCTTTCCTTTTTACCCGGCGAGATGACGCCACAGGACCGGCGTCTCATTCAGCGGGCGCTCAGGGCTCTGGA
CCGCCACCTGCATGAGCCCGGCGTAGCCTTCACCTCTACCCACGCCGTACGTGAATGGCTGCGACTGCATATGGCCGCGC
TTGAGCGGGAAGAGTTCCGGGTGTTGTATCTGGACAACCAGAATCAGTTGATTGCCCATGAAACGCTCTTCACCGGCACG
ATTAACCGCACCGAGGTGCATCCCCGGGAGGTGGTCAAACGTGCTCTGCACTTCAACGCGGCGGCGGTGATACTCGCGCA
TAACCATCCTTCCGGCGAGACGACACCTAGCCAGGCCGACAAAACCCTCACGCAGCGACTGGTTCAGGTGCTTCAGCTGG
TGGATATCCGTGTCCCTGACCATCTGATTGTCGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA91EE93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65.823

0.38

Multiple sequence alignment