Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   C0J56_RS29265 Genome accession   NZ_CP025542
Coordinates   6427218..6428711 (+) Length   497 a.a.
NCBI ID   WP_134926381.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain 2P24     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6422218..6433711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0J56_RS29240 (C0J56_29235) - 6422606..6423031 (-) 426 WP_014340828.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  C0J56_RS29245 (C0J56_29240) - 6423243..6424577 (-) 1335 WP_134926376.1 ammonium transporter -
  C0J56_RS29250 (C0J56_29245) glnK 6424611..6424949 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  C0J56_RS29255 (C0J56_29250) - 6425364..6425624 (+) 261 WP_134926377.1 accessory factor UbiK family protein -
  C0J56_RS29260 (C0J56_29255) - 6425688..6426965 (-) 1278 WP_134926379.1 HAMP domain-containing histidine kinase -
  C0J56_RS29265 (C0J56_29260) comM 6427218..6428711 (+) 1494 WP_134926381.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  C0J56_RS29270 (C0J56_29265) - 6428718..6429932 (-) 1215 WP_134926383.1 aldose 1-epimerase family protein -
  C0J56_RS29275 (C0J56_29270) - 6430177..6432153 (-) 1977 WP_134926384.1 methyl-accepting chemotaxis protein -
  C0J56_RS29285 (C0J56_29280) - 6432340..6433260 (-) 921 WP_134926386.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53012.16 Da        Isoelectric Point: 8.0514

>NTDB_id=262473 C0J56_RS29265 WP_134926381.1 6427218..6428711(+) (comM) [Pseudomonas fluorescens strain 2P24]
MSLAIVHSRAQVGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLNFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRPVRGVLPAALAARKAGRMLVVPRANAEEACLASGLKVIAVDHL
LEAVAHFNGHTPVEPFVSNGLLSASKPYPDLNEVQGQAGAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVASCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVVSRARDRVRFPARFQLVAAMNPCPCGYLGEPSGRCACTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPKSEP
GADTATVAEHVAEARERQQKRQGCANAFLDLPGLRRHCKLSALDETWLETACERLTLSLRAAHRLLKVARTLADLEQVER
ISREHLAEALQYRPATP

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=262473 C0J56_RS29265 WP_134926381.1 6427218..6428711(+) (comM) [Pseudomonas fluorescens strain 2P24]
ATGTCGCTTGCCATTGTCCATAGCCGCGCCCAGGTGGGGGTGGAGGCTCCTGCCGTTACCGTTGAAGTTCACCTGGCCAA
TGGCTTGCCATCGCTGACGATGGTGGGTCTGCCAGAGGCGGCGGTAAAGGAAAGCAAGGATCGGGTGCGCAGCGCGATCA
TCAATTCGGGGCTGAATTTCCCGGCGCGGCGCATCACCCTGAACCTGGCGCCGGCAGATCTACCAAAGGACGGCGGGCGC
TTCGACCTGGCCATTGCCTTGGGGATCCTGTCGGCCAGCGTGCAGGTGCCAACCCTGACGCTTGACGATGTGGAATGCCT
CGGCGAACTGGCCTTGTCCGGCGCAGTGCGTCCGGTGCGTGGGGTGTTGCCCGCGGCACTGGCGGCGCGCAAGGCCGGGC
GTATGCTGGTGGTGCCACGGGCCAACGCCGAGGAGGCCTGCCTGGCCTCGGGGCTGAAGGTGATCGCCGTGGATCATCTA
CTCGAAGCGGTGGCGCATTTCAACGGTCACACGCCGGTCGAGCCTTTCGTTTCCAATGGACTGCTCTCGGCCAGCAAACC
CTATCCCGACCTGAATGAGGTGCAAGGCCAGGCCGGGGCCAAGCGGGCACTGCTGATCGCCGCCGCGGGAGCTCATAACC
TGCTGTTCAGCGGGCCACCGGGCACCGGCAAGACACTGCTGGCGAGCCGTCTGCCGGGGCTGTTGCCACCCTTGGCCGAA
AGCGAGGCCCTGGAAGTCGCGGCCATCCAGTCAGTGGCCAGTTGCGTACCGTTGAGCCATTGGCCACAACGCCCGTTTCG
CCAGCCCCACCATTCGGCTTCCGGCCCGGCGCTAGTGGGTGGCGGATCGAAACCGCAACCAGGGGAAATCACCCTCGCCC
ACCATGGCGTGCTATTCCTGGATGAACTGCCGGAGTTCGACCGCAAGGTGCTGGAAGTCCTGAGAGAACCGCTGGAATCG
GGCCACATCGTGGTTTCTCGTGCCCGTGACCGTGTGCGCTTTCCGGCACGCTTCCAACTTGTGGCGGCGATGAATCCCTG
CCCCTGTGGATATCTAGGCGAACCCAGCGGCCGTTGCGCCTGTACGCCAGACATGGTGCAGCGCTACCGCAATAAGCTCT
CCGGCCCCTTGCTGGACCGCATCGACCTGCACCTGACGGTTGCCCGCGAGGCCACGGCGTTGAACCCCAAAAGCGAACCC
GGTGCCGATACGGCCACTGTCGCCGAGCACGTGGCCGAAGCCCGGGAACGCCAGCAAAAACGCCAGGGCTGTGCCAACGC
GTTCCTGGATCTGCCGGGTTTGCGTCGGCATTGCAAACTATCCGCGCTCGATGAAACGTGGCTGGAAACCGCTTGCGAAC
GGCTGACCCTGTCGCTGCGCGCCGCCCACCGCCTGCTCAAGGTCGCCCGTACGTTGGCAGACCTTGAGCAGGTGGAACGG
ATCAGTCGCGAGCACTTGGCCGAGGCGTTGCAGTATCGGCCCGCTACGCCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.354

99.598

0.551
  comM Vibrio cholerae strain A1552

55.152

99.598

0.549
  comM Haemophilus influenzae Rd KW20

53.707

100

0.539
  comM Glaesserella parasuis strain SC1401

52.8

100

0.531
  comM Legionella pneumophila str. Paris

50

99.799

0.499
  comM Legionella pneumophila strain ERS1305867

50

99.799

0.499
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.833

100

0.465

Multiple sequence alignment