Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CU052_RS07730 Genome accession   NZ_CP025537
Coordinates   1617550..1618095 (+) Length   181 a.a.
NCBI ID   WP_101904447.1    Uniprot ID   -
Organism   Vibrio harveyi strain 345     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1612550..1623095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU052_RS07715 (CU052_08115) uvrA 1612617..1615439 (-) 2823 WP_053052664.1 excinuclease ABC subunit UvrA -
  CU052_RS07720 (CU052_08120) galU 1615577..1616449 (-) 873 WP_005444317.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  CU052_RS07725 (CU052_08125) qstR 1616611..1617255 (-) 645 WP_009698824.1 LuxR C-terminal-related transcriptional regulator Regulator
  CU052_RS07730 (CU052_08130) ssb 1617550..1618095 (+) 546 WP_101904447.1 single-stranded DNA-binding protein Machinery gene
  CU052_RS07735 (CU052_08135) csrD 1618347..1620356 (+) 2010 WP_101904448.1 RNase E specificity factor CsrD -
  CU052_RS07740 (CU052_08140) - 1620368..1621069 (+) 702 Protein_1388 MSHA biogenesis protein MshI -
  CU052_RS07745 (CU052_08145) - 1621246..1622436 (-) 1191 WP_101904449.1 IS91 family transposase -
  CU052_RS07750 (CU052_08150) - 1622455..1622661 (-) 207 WP_159066149.1 hypothetical protein -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 20190.24 Da        Isoelectric Point: 4.9269

>NTDB_id=262399 CU052_RS07730 WP_101904447.1 1617550..1618095(+) (ssb) [Vibrio harveyi strain 345]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQQQQQQGGWGQPQQPAQQQQYNAPQQQQQQQQA
PQQQQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=262399 CU052_RS07730 WP_101904447.1 1617550..1618095(+) (ssb) [Vibrio harveyi strain 345]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTATTCGGCAAGCTTGCTGAAGTAGCGGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGTCAAGATCGCTACTCAACAGAAGTGGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGCTCCAATGGGTGGCGGTCAACAACAGCAGCAACAAG
GCGGCTGGGGTCAACCTCAACAACCGGCTCAACAGCAGCAATACAACGCTCCTCAGCAACAGCAACAGCAACAACAGGCT
CCGCAGCAACAACAGCCGCAATATAACGAGCCGCCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

80.435

100

0.818
  ssb Glaesserella parasuis strain SC1401

55.851

100

0.58
  ssb Neisseria meningitidis MC58

46.629

98.343

0.459
  ssb Neisseria gonorrhoeae MS11

46.629

98.343

0.459

Multiple sequence alignment