Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   CU052_RS07725 Genome accession   NZ_CP025537
Coordinates   1616611..1617255 (-) Length   214 a.a.
NCBI ID   WP_009698824.1    Uniprot ID   A0A9X3RX18
Organism   Vibrio harveyi strain 345     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1611611..1622255
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU052_RS07715 (CU052_08115) uvrA 1612617..1615439 (-) 2823 WP_053052664.1 excinuclease ABC subunit UvrA -
  CU052_RS07720 (CU052_08120) galU 1615577..1616449 (-) 873 WP_005444317.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  CU052_RS07725 (CU052_08125) qstR 1616611..1617255 (-) 645 WP_009698824.1 LuxR C-terminal-related transcriptional regulator Regulator
  CU052_RS07730 (CU052_08130) ssb 1617550..1618095 (+) 546 WP_101904447.1 single-stranded DNA-binding protein Machinery gene
  CU052_RS07735 (CU052_08135) csrD 1618347..1620356 (+) 2010 WP_101904448.1 RNase E specificity factor CsrD -
  CU052_RS07740 (CU052_08140) - 1620368..1621069 (+) 702 Protein_1388 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24591.43 Da        Isoelectric Point: 8.7703

>NTDB_id=262398 CU052_RS07725 WP_009698824.1 1616611..1617255(-) (qstR) [Vibrio harveyi strain 345]
MKKSAYARKLFLISMEDDAEKKVEALVKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKTLVQSIKNLPLIWKNFET
VIFNVPKRLTTDELLSFGQLKGVFYQEDSLEQVGEGLREIVNGQNWLPRNVTSQLLHYYRNVLSTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLLS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=262398 CU052_RS07725 WP_009698824.1 1616611..1617255(-) (qstR) [Vibrio harveyi strain 345]
GTGAAAAAATCAGCTTATGCGAGAAAATTGTTTTTGATCAGTATGGAAGACGACGCAGAGAAAAAAGTCGAAGCGCTCGT
GAAATACACTGATATTGATATCCCTGTCATCTCCACACAAGCACTGATGGAAGCCAATCCAAAGCATCGCAATAAAATCC
TGTTGATTGACTTTAGTGAACATAAAACACTCGTACAATCGATCAAAAACTTGCCTTTAATTTGGAAGAATTTTGAAACG
GTCATATTCAATGTTCCTAAACGCTTAACCACCGATGAGTTGTTGTCTTTTGGGCAACTAAAAGGCGTATTTTATCAGGA
AGACTCTCTAGAGCAGGTAGGTGAAGGTTTGAGAGAAATCGTGAATGGTCAGAACTGGTTGCCAAGAAATGTCACTAGTC
AATTGCTTCACTATTATCGCAATGTCCTCAGCACGCACACCGCCCCAGCAACCGTGGACTTAACCATCCGTGAGTTGCAA
GTTTTACGTTGTCTTCAGGCAGGAGCATCTAACAATCAAATGGCAGAAGAATTGTTCGTCAGTGAATTCACCATTAAATC
TCACCTTTATCAGATATTCAAAAAGCTCTCCGTAAAGAATCGCGTTCAAGCTATCGCTTGGGCAGACCAAAACTTGTTGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

92.991

100

0.93
  qstR Vibrio parahaemolyticus RIMD 2210633

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.336

100

0.523

Multiple sequence alignment