Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   H16_RS01975 Genome accession   NC_008313
Coordinates   421642..422181 (+) Length   179 a.a.
NCBI ID   WP_011614492.1    Uniprot ID   Q0KEL9
Organism   Cupriavidus necator H16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 416642..427181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H16_RS01965 (H16_A0400) uvrA 416981..419842 (-) 2862 WP_010814400.1 excinuclease ABC subunit UvrA -
  H16_RS01970 (H16_A0401) - 420209..421459 (+) 1251 WP_011614491.1 MFS transporter -
  H16_RS01975 (H16_A0402) ssb 421642..422181 (+) 540 WP_011614492.1 single-stranded DNA-binding protein Machinery gene
  H16_RS01980 (H16_A0403) - 422384..423427 (+) 1044 WP_231881377.1 porin -
  H16_RS01985 (H16_A0404) - 423443..424429 (+) 987 WP_011614494.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  H16_RS01990 (H16_A0405) - 424426..425361 (+) 936 WP_011614495.1 BMP family lipoprotein -
  H16_RS01995 (H16_A0406) - 425389..426561 (-) 1173 WP_011614496.1 GGDEF domain-containing protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 18666.34 Da        Isoelectric Point: 5.9517

>NTDB_id=26232 H16_RS01975 WP_011614492.1 421642..422181(+) (ssb) [Cupriavidus necator H16]
MASVNKVILVGNLGADPETRYLPSGDAVTNIRLATTDRYKDKQSGEMKEATEWHRVSFFGKIAEIAGQYLRKGSSVYIEG
RIRTRKWQDQSGQDKYSTEIVADQMQMLGSRQGGGGGGGDEGGYGGGAGGGGGYSREASGGGYGGGRGGQGGGQSGGAAR
RPQQPASNGFEDMDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=26232 H16_RS01975 WP_011614492.1 421642..422181(+) (ssb) [Cupriavidus necator H16]
ATGGCATCGGTCAACAAAGTCATTCTCGTCGGCAACCTCGGCGCAGACCCGGAAACCCGCTACCTGCCCAGCGGCGACGC
CGTGACCAATATCCGCCTGGCGACCACCGATCGCTACAAGGACAAGCAGAGCGGCGAGATGAAGGAGGCCACCGAATGGC
ACCGCGTCTCGTTCTTCGGCAAGATCGCCGAAATCGCCGGCCAGTACCTGCGCAAGGGATCGTCGGTCTATATCGAAGGC
CGCATCCGCACCCGCAAGTGGCAGGACCAGTCGGGCCAGGACAAGTACTCCACTGAAATCGTTGCCGACCAGATGCAGAT
GCTGGGCTCGCGCCAGGGTGGTGGCGGCGGTGGCGGTGACGAAGGCGGCTACGGTGGCGGCGCAGGCGGCGGTGGTGGCT
ACAGCCGCGAAGCGTCGGGCGGCGGCTACGGCGGTGGCCGCGGCGGCCAGGGCGGCGGCCAGAGCGGTGGCGCTGCGCGC
CGGCCGCAGCAGCCCGCCTCGAATGGTTTCGAGGATATGGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0KEL9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

51.596

100

0.542
  ssb Glaesserella parasuis strain SC1401

50.811

100

0.525
  ssb Neisseria meningitidis MC58

44.633

98.883

0.441
  ssb Neisseria gonorrhoeae MS11

44.068

98.883

0.436
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.64

99.441

0.374

Multiple sequence alignment