Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABO_RS12935 Genome accession   NC_008260
Coordinates   2870530..2872026 (+) Length   498 a.a.
NCBI ID   WP_011589803.1    Uniprot ID   A0AAD1B342
Organism   Alcanivorax borkumensis SK2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2865530..2877026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABO_RS12905 (ABO_2527) - 2865663..2866106 (-) 444 WP_011589799.1 GAF domain-containing protein -
  ABO_RS12915 (ABO_2528) - 2866720..2867916 (-) 1197 WP_041705123.1 class I SAM-dependent rRNA methyltransferase -
  ABO_RS12920 (ABO_2529) - 2868143..2869390 (-) 1248 WP_011589801.1 ammonium transporter -
  ABO_RS12925 (ABO_2530) glnK 2869464..2869802 (-) 339 WP_008930504.1 P-II family nitrogen regulator -
  ABO_RS12930 (ABO_2531) - 2870114..2870362 (+) 249 WP_011589802.1 accessory factor UbiK family protein -
  ABO_RS12935 (ABO_2532) comM 2870530..2872026 (+) 1497 WP_011589803.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABO_RS12940 (ABO_2533) - 2872140..2873339 (-) 1200 WP_011589804.1 acyl-CoA dehydrogenase family protein -
  ABO_RS12945 (ABO_2534) - 2873418..2874173 (-) 756 WP_011589805.1 SDR family NAD(P)-dependent oxidoreductase -
  ABO_RS12950 (ABO_2535) - 2874238..2874726 (-) 489 WP_035460021.1 NUDIX hydrolase -
  ABO_RS12955 (ABO_2536) - 2874942..2875988 (-) 1047 WP_011589807.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53987.73 Da        Isoelectric Point: 8.2609

>NTDB_id=26161 ABO_RS12935 WP_011589803.1 2870530..2872026(+) (comM) [Alcanivorax borkumensis SK2]
MTHALLYSRAPVGIEARTVRVETHLAPGLPAFTIVGLGDTAVRESRDRVRSALVNSGFDFPQRRITVSLAPADLPKDGGR
FDLPIALGILLASGQLGRIDTDPFEFIGELSLNGSLSPVPAMLPCALACQSTGRTLIVPRDNADEAALAGAGTIAADQLA
HVAAHLAGQTPLPLHHCDAPLAGVYQGGCLSEIRGQAHAKRVLEIAAAGGHSMLLCGPPGAGKSMLASRLPGLVPPLNPN
QALEVAAIYSLRQPRDSSLFHQRPYRAPHHTASATALVGGGSYPRPGEISLAHHGILFLDELPEFDRRVLEVLREPLETG
EVSIARAAQQLTFPARFQLIAAMNPCPCGYLGDPEKSCGYRCEKAKRYQSKLSGPLLDRIDLHLDVPAVDASELLGDKQG
EASHTVRERVKEAWRLQWLRQKQLNRELKNDQLEPMLRSHRDWLAGVMQRLGLSARALHRSARVARTIADLQGSDNVERD
HLREALSYRQNLQQKQSS

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=26161 ABO_RS12935 WP_011589803.1 2870530..2872026(+) (comM) [Alcanivorax borkumensis SK2]
GTGACGCATGCGCTGCTATACAGCCGGGCACCGGTAGGTATTGAAGCCCGCACCGTGCGGGTGGAAACCCATCTAGCTCC
GGGTTTGCCGGCATTTACTATTGTCGGATTGGGCGATACCGCGGTACGCGAGAGCCGCGACCGAGTACGCTCTGCGCTGG
TTAACAGCGGCTTCGATTTTCCCCAGCGGCGCATCACCGTGAGCTTGGCACCGGCGGATTTACCCAAGGACGGCGGTCGC
TTCGACCTACCCATCGCGCTGGGTATTTTGCTGGCCAGCGGCCAATTGGGTCGCATCGACACAGACCCATTCGAATTTAT
TGGCGAACTCTCCCTGAACGGTTCCCTTAGCCCGGTCCCGGCTATGCTTCCCTGTGCCCTGGCTTGCCAATCCACCGGCC
GCACCCTGATCGTCCCCCGTGACAACGCCGACGAAGCGGCCCTCGCCGGGGCCGGCACCATCGCCGCCGACCAACTCGCA
CACGTTGCTGCCCACCTGGCCGGGCAAACGCCGTTGCCGCTGCACCACTGTGACGCGCCACTGGCTGGGGTCTATCAAGG
TGGCTGCCTCTCGGAGATCCGCGGCCAAGCCCACGCTAAACGGGTGCTGGAGATTGCCGCAGCTGGCGGACATTCCATGT
TGCTCTGCGGACCGCCTGGTGCCGGCAAGAGCATGCTGGCATCCCGCTTACCCGGGCTGGTGCCGCCACTGAACCCGAAC
CAGGCACTGGAAGTGGCCGCGATTTACTCTCTACGCCAGCCTCGTGACAGCAGCCTGTTTCATCAACGGCCTTACCGAGC
CCCGCACCACACCGCGTCAGCAACCGCACTGGTAGGCGGCGGCAGCTACCCGCGACCAGGTGAAATATCCTTGGCCCACC
ACGGCATTCTGTTTCTGGATGAATTACCGGAATTCGACCGACGGGTATTGGAGGTCTTGCGCGAACCGCTGGAAACCGGT
GAAGTCAGCATTGCCCGCGCCGCCCAGCAGCTCACCTTCCCTGCCCGCTTCCAGTTGATTGCGGCGATGAACCCATGCCC
CTGTGGTTATTTGGGTGATCCTGAAAAAAGTTGTGGCTACCGCTGTGAAAAAGCCAAACGCTATCAGAGCAAACTGTCCG
GCCCGTTGCTGGATCGCATTGATCTGCACCTGGACGTGCCCGCCGTGGATGCCAGCGAACTTCTAGGAGATAAGCAGGGA
GAGGCCAGCCACACGGTCCGCGAACGGGTTAAAGAAGCTTGGCGCCTGCAATGGTTGCGGCAAAAGCAACTGAACCGAGA
ACTAAAAAACGACCAGTTGGAGCCTATGCTGCGCTCTCACCGTGATTGGTTAGCCGGCGTCATGCAGCGGCTGGGGTTGT
CCGCTCGTGCCCTGCACCGCAGTGCACGGGTGGCGCGAACCATTGCCGACCTGCAGGGTAGCGACAACGTGGAGCGGGAC
CACCTTCGCGAAGCGCTAAGTTACCGGCAAAACCTTCAGCAAAAACAGAGCTCCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-393)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-489)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

50.398

100

0.508
  comM Legionella pneumophila strain ERS1305867

49.802

100

0.504
  comM Legionella pneumophila str. Paris

49.802

100

0.504
  comM Vibrio cholerae strain A1552

50.707

99.398

0.504
  comM Haemophilus influenzae Rd KW20

49.304

100

0.498
  comM Glaesserella parasuis strain SC1401

47.619

100

0.482
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.4

100

0.426

Multiple sequence alignment