Detailed information NTG0260955

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: CR921_RS08960
• Genome accession: NZ_CP025399
• Coordinates: 1715342..1715779 (-)
• Length: 145 a.a.
• NCBI ID: WP_011681686.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain GABA
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1710342..1720779

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CR921_RS08920	-	1710406..1711068 (-)	663	WP_011681679.1	CPBP family intramembrane glutamic endopeptidase	-
CR921_RS08925	-	1711165..1711608 (-)	444	WP_011681680.1	hypothetical protein	-
CR921_RS10525	-	1711682..1712020 (-)	339	WP_224103197.1	CPBP family intramembrane glutamic endopeptidase	-
CR921_RS10530	-	1712064..1712339 (-)	276	WP_011681681.1	hypothetical protein	-
CR921_RS08940	-	1712351..1712548 (-)	198	WP_011681682.1	helix-turn-helix transcriptional regulator	-
CR921_RS08945	-	1712797..1713990 (-)	1194	WP_014608740.1	acetate kinase	-
CR921_RS08950	comYH	1714046..1715002 (-)	957	WP_011681684.1	class I SAM-dependent methyltransferase	Machinery gene
CR921_RS08955	comGG	1715047..1715364 (-)	318	WP_011681685.1	competence type IV pilus minor pilin ComGG	-
CR921_RS08960	comYF	1715342..1715779 (-)	438	WP_011681686.1	competence type IV pilus minor pilin ComGF	Machinery gene
CR921_RS08965	comGE	1715763..1716056 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
CR921_RS08970	comYD	1716028..1716456 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
CR921_RS08975	comYC	1716416..1716742 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
CR921_RS08980	comYB	1716739..1717839 (-)	1101	WP_120764773.1	competence type IV pilus assembly protein ComGB	Machinery gene
CR921_RS08985	comYA	1717721..1718662 (-)	942	WP_014622005.1	competence type IV pilus ATPase ComGA	Machinery gene
CR921_RS08990	-	1718743..1719105 (-)	363	WP_023909982.1	DUF1033 family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16375.85 Da
• Isoelectric Point: 8.4500

>NTDB_id=260955 CR921_RS08960 WP_011681686.1 1715342..1715779(-) (comYF) [Streptococcus thermophilus strain GABA]
MYLSSKLRAFTLLECLVALLVIAGSVQVYQGLTTVLVSNVKQVRQQENQDWLLFVQQMEAELEGCQLVKVEGNKLYVKQD
NQDLAFGLSSASDFRKTNADGRGYQPMLFDVKSSKVSQKNQIVTIQVTLKNELQRSFVYAFEKTG

Nucleotide

• Length: 438 bp

>NTDB_id=260955 CR921_RS08960 WP_011681686.1 1715342..1715779(-) (comYF) [Streptococcus thermophilus strain GABA]
ATGTATCTAAGCAGTAAGCTGCGTGCCTTTACCCTCTTGGAATGTCTAGTGGCCTTGTTGGTCATTGCTGGCTCAGTTCA
AGTTTATCAAGGGTTAACCACTGTACTTGTGAGTAATGTTAAGCAGGTAAGACAACAAGAAAACCAAGATTGGCTTCTAT
TTGTTCAACAAATGGAGGCAGAATTAGAAGGATGTCAGTTGGTCAAGGTAGAGGGGAACAAACTCTATGTCAAGCAGGAT
AATCAAGACTTGGCTTTTGGTCTTTCAAGTGCCTCTGATTTTCGAAAAACAAATGCTGATGGTCGAGGTTATCAACCAAT
GCTTTTCGATGTCAAATCTAGTAAGGTAAGTCAAAAGAACCAGATAGTTACCATCCAAGTGACTCTTAAAAATGAACTAC
AAAGGAGTTTTGTTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	58.156	97.241	0.566
comYF	Streptococcus mutans UA159	57.447	97.241	0.559
comGF/cglF	Streptococcus pneumoniae D39	49.286	96.552	0.476
comGF/cglF	Streptococcus pneumoniae Rx1	49.286	96.552	0.476
comGF/cglF	Streptococcus pneumoniae R6	49.286	96.552	0.476
comGF/cglF	Streptococcus pneumoniae TIGR4	49.286	96.552	0.476
comGF/cglF	Streptococcus mitis NCTC 12261	47.518	97.241	0.462
comGF/cglF	Streptococcus mitis SK321	46.809	97.241	0.455
comGF	Lactococcus lactis subsp. cremoris KW2	45.324	95.862	0.434