Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   CR921_RS08950 Genome accession   NZ_CP025399
Coordinates   1714046..1715002 (-) Length   318 a.a.
NCBI ID   WP_011681684.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain GABA     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1709046..1720002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR921_RS08915 proC 1709606..1710376 (+) 771 WP_101415708.1 pyrroline-5-carboxylate reductase -
  CR921_RS08920 - 1710406..1711068 (-) 663 WP_011681679.1 CPBP family intramembrane glutamic endopeptidase -
  CR921_RS08925 - 1711165..1711608 (-) 444 WP_011681680.1 hypothetical protein -
  CR921_RS10525 - 1711682..1712020 (-) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  CR921_RS10530 - 1712064..1712339 (-) 276 WP_011681681.1 hypothetical protein -
  CR921_RS08940 - 1712351..1712548 (-) 198 WP_011681682.1 helix-turn-helix transcriptional regulator -
  CR921_RS08945 - 1712797..1713990 (-) 1194 WP_014608740.1 acetate kinase -
  CR921_RS08950 comYH 1714046..1715002 (-) 957 WP_011681684.1 class I SAM-dependent methyltransferase Machinery gene
  CR921_RS08955 comGG 1715047..1715364 (-) 318 WP_011681685.1 competence type IV pilus minor pilin ComGG -
  CR921_RS08960 comYF 1715342..1715779 (-) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  CR921_RS08965 comGE 1715763..1716056 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  CR921_RS08970 comYD 1716028..1716456 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  CR921_RS08975 comYC 1716416..1716742 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  CR921_RS08980 comYB 1716739..1717839 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  CR921_RS08985 comYA 1717721..1718662 (-) 942 WP_014622005.1 competence type IV pilus ATPase ComGA Machinery gene
  CR921_RS08990 - 1718743..1719105 (-) 363 WP_023909982.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35843.02 Da        Isoelectric Point: 4.7891

>NTDB_id=260954 CR921_RS08950 WP_011681684.1 1714046..1715002(-) (comYH) [Streptococcus thermophilus strain GABA]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLKNPRVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=260954 CR921_RS08950 WP_011681684.1 1714046..1715002(-) (comYH) [Streptococcus thermophilus strain GABA]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAATG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGAAAAATCCAAGGGTCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682

Multiple sequence alignment