Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   DRA65_RS02675 Genome accession   NZ_CP030826
Coordinates   519483..519956 (+) Length   157 a.a.
NCBI ID   WP_196083684.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 11-251     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 514483..524956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRA65_RS02650 (DRA65_03050) dnaB 514911..516317 (+) 1407 WP_002248498.1 replicative DNA helicase -
  DRA65_RS02655 (DRA65_03055) pilH 516626..517294 (+) 669 WP_002249139.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DRA65_RS02660 (DRA65_03060) pilV 517324..517938 (+) 615 WP_196083683.1 type IV pilus modification protein PilV Regulator
  DRA65_RS02665 (DRA65_03065) pilJ 517935..518900 (+) 966 WP_196083679.1 PilW family protein Machinery gene
  DRA65_RS02670 (DRA65_03070) pilK 518879..519478 (+) 600 WP_002248501.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DRA65_RS02675 (DRA65_03075) pilX 519483..519956 (+) 474 WP_196083684.1 PilX family type IV pilin Machinery gene
  DRA65_RS02680 (DRA65_03100) - 522063..522491 (-) 429 Protein_514 AzlC family ABC transporter permease -
  DRA65_RS02685 (DRA65_03105) dut 522634..523086 (+) 453 WP_002220679.1 dUTP diphosphatase -
  DRA65_RS02690 (DRA65_03110) dapC 523162..524349 (+) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -
  DRA65_RS11530 - 524437..524562 (+) 126 Protein_517 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17540.35 Da        Isoelectric Point: 9.4344

>NTDB_id=260885 DRA65_RS02675 WP_196083684.1 519483..519956(+) (pilX) [Neisseria meningitidis strain 11-251]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNISKQFILKNPLDDNQIIKSKLEIFVSGYKM
NPKIAEKYNVSVHFVNKEKPRAYSLVGVPKTGTGYTLSVWMNSVGDGYKCRDAASARAHLETLSSDVGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=260885 DRA65_RS02675 WP_196083684.1 519483..519956(+) (pilX) [Neisseria meningitidis strain 11-251]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATATTTCCAAAC
AGTTTATTTTGAAAAATCCCCTGGACGATAATCAGATCATCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCGAAAAATATAATGTTTCGGTGCATTTTGTCAATAAGGAAAAACCAAGGGCATACAGCTTGGTCGG
CGTTCCAAAGACGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCGAGCCCATTTGGAGACCTTGTCCTCAGATGTCGGCTGTGAAGCCTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Neisseria meningitidis 8013

98.726

100

0.987
  pilL Neisseria gonorrhoeae MS11

87.261

100

0.873