Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   DRA65_RS02670 Genome accession   NZ_CP030826
Coordinates   518879..519478 (+) Length   199 a.a.
NCBI ID   WP_002248501.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 11-251     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 513879..524478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRA65_RS02645 (DRA65_03040) - 514161..514748 (-) 588 WP_002248497.1 superoxide dismutase -
  DRA65_RS02650 (DRA65_03050) dnaB 514911..516317 (+) 1407 WP_002248498.1 replicative DNA helicase -
  DRA65_RS02655 (DRA65_03055) pilH 516626..517294 (+) 669 WP_002249139.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DRA65_RS02660 (DRA65_03060) pilV 517324..517938 (+) 615 WP_196083683.1 type IV pilus modification protein PilV Regulator
  DRA65_RS02665 (DRA65_03065) pilJ 517935..518900 (+) 966 WP_196083679.1 PilW family protein Machinery gene
  DRA65_RS02670 (DRA65_03070) pilK 518879..519478 (+) 600 WP_002248501.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DRA65_RS02675 (DRA65_03075) pilX 519483..519956 (+) 474 WP_196083684.1 PilX family type IV pilin Machinery gene
  DRA65_RS02680 (DRA65_03100) - 522063..522491 (-) 429 Protein_514 AzlC family ABC transporter permease -
  DRA65_RS02685 (DRA65_03105) dut 522634..523086 (+) 453 WP_002220679.1 dUTP diphosphatase -
  DRA65_RS02690 (DRA65_03110) dapC 523162..524349 (+) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21935.90 Da        Isoelectric Point: 6.9099

>NTDB_id=260884 DRA65_RS02670 WP_002248501.1 518879..519478(+) (pilK) [Neisseria meningitidis strain 11-251]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISTNESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNTNNGNEEAFDNIVVQGKPIVEAVKRFCPANSTDLCIDKKGMEYKKGTRSVSKPPHYI
IEYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 600 bp        

>NTDB_id=260884 DRA65_RS02670 WP_002248501.1 518879..519478(+) (pilK) [Neisseria meningitidis strain 11-251]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTACTGATGGT
GATGATCGTCGTGGCATTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGAGGATCAGTACCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGTGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATACAAATAATGG
TAATGAAGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCATCGTTGAGGCGGTGAAGCGTTTTTGCCCTGCAAATT
CTACCGACCTGTGCATTGACAAGAAAGGGATGGAATATAAGAAAGGCACGAGAAGCGTCAGCAAACCACCACACTATATT
ATCGAATATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGT
GGTCGTCCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-194)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

85.222

100

0.869