Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   DRA65_RS02665 Genome accession   NZ_CP030826
Coordinates   517935..518900 (+) Length   321 a.a.
NCBI ID   WP_196083679.1    Uniprot ID   -
Organism   Neisseria meningitidis strain 11-251     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 512935..523900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DRA65_RS02640 (DRA65_03030) - 513080..513589 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  DRA65_RS02645 (DRA65_03040) - 514161..514748 (-) 588 WP_002248497.1 superoxide dismutase -
  DRA65_RS02650 (DRA65_03050) dnaB 514911..516317 (+) 1407 WP_002248498.1 replicative DNA helicase -
  DRA65_RS02655 (DRA65_03055) pilH 516626..517294 (+) 669 WP_002249139.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DRA65_RS02660 (DRA65_03060) pilV 517324..517938 (+) 615 WP_196083683.1 type IV pilus modification protein PilV Regulator
  DRA65_RS02665 (DRA65_03065) pilJ 517935..518900 (+) 966 WP_196083679.1 PilW family protein Machinery gene
  DRA65_RS02670 (DRA65_03070) pilK 518879..519478 (+) 600 WP_002248501.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DRA65_RS02675 (DRA65_03075) pilX 519483..519956 (+) 474 WP_196083684.1 PilX family type IV pilin Machinery gene
  DRA65_RS02680 (DRA65_03100) - 522063..522491 (-) 429 Protein_514 AzlC family ABC transporter permease -
  DRA65_RS02685 (DRA65_03105) dut 522634..523086 (+) 453 WP_002220679.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 35356.32 Da        Isoelectric Point: 9.6175

>NTDB_id=260883 DRA65_RS02665 WP_196083679.1 517935..518900(+) (pilJ) [Neisseria meningitidis strain 11-251]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKNVVSDVAQKNRLFSLKGSSANKLIPNGTDNKLIPITESLDIGYQGFTQRLNALVFQYGIDDLDASAETVV
VSSCSKIAKPGKKISTLQEAKSVLRITNDDKQNGNITRQRYVVNAYAVGRIAGEEGLFRFQLDDKGKWGNPQLLAKKVRR
MDVRYIYVSGCPEDDDAGKEETFKYTDKFDKSKNAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNVCANRT
L

Nucleotide


Download         Length: 966 bp        

>NTDB_id=260883 DRA65_RS02665 WP_196083679.1 517935..518900(+) (pilJ) [Neisseria meningitidis strain 11-251]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACGTCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCTATTCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGAATGTTGTTTCCGATGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAGG
GAGCAGTGCAAATAAACTTATCCCCAACGGTACAGATAATAAACTTATCCCCATAACGGAATCTTTAGATATCGGATATC
AGGGTTTTACCCAGCGCCTTAACGCATTGGTTTTCCAATACGGTATCGATGATCTTGATGCGAGTGCTGAGACTGTTGTA
GTCAGCAGCTGTTCCAAAATAGCAAAACCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGTATTACGGATTAC
TAATGATGATAAACAAAATGGAAATATCACCCGTCAAAGGTATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGGTG
AGGAAGGTTTGTTCCGCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGGTTAGACGT
ATGGATGTGCGGTATATCTATGTTTCCGGCTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAAATATACGGA
TAAATTCGACAAATCCAAAAATGCTGTTACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTG
CCGCTTCTTCAGACAATCATATTTATGCTTACCGTATCGATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACA
CTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

79.193

100

0.794