Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   YPN_RS00400 Genome accession   NC_008149
Coordinates   96530..98053 (-) Length   507 a.a.
NCBI ID   WP_002228240.1    Uniprot ID   A0A0H2YF57
Organism   Yersinia pestis Nepal516     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 91530..103053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YPN_RS00380 (YPN_0061) ytfT 92937..93956 (+) 1020 WP_002212022.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  YPN_RS00385 (YPN_0062) yjfF 93956..94948 (+) 993 WP_002212021.1 galactofuranose ABC transporter, permease protein YjfF -
  YPN_RS00390 (YPN_0063) hdfR 94935..95816 (-) 882 WP_002212020.1 HTH-type transcriptional regulator HdfR -
  YPN_RS00395 (YPN_0064) - 95935..96273 (+) 339 WP_002212019.1 DUF413 domain-containing protein -
  YPN_RS00400 (YPN_0065) comM 96530..98053 (-) 1524 WP_002228240.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  YPN_RS21595 ilvL 98437..98535 (+) 99 WP_002231873.1 ilv operon leader peptide -
  YPN_RS00405 (YPN_0066) ilvG 98676..100322 (+) 1647 WP_002212017.1 acetolactate synthase 2 catalytic subunit -
  YPN_RS00410 (YPN_0067) ilvM 100319..100576 (+) 258 WP_002212016.1 acetolactate synthase 2 small subunit -
  YPN_RS00415 (YPN_0068) - 100599..101525 (+) 927 WP_002212015.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54505.97 Da        Isoelectric Point: 7.6013

>NTDB_id=25996 YPN_RS00400 WP_002228240.1 96530..98053(-) (comM) [Yersinia pestis Nepal516]
MSLATIHTRATLGIQAPPVAVEVHISNGLPGLILVGLPETTVKEARDRVRSALINSGFNFPAKRITVSLAPADLPKEGGR
YDLPIALAILAASEQIPADKLAHYEFLGELALSGALRRVSGAIPAALTCSEANRQLILPTANGLEIGLIPQGNSWVADHL
LAVCGFLQGENPLAQGQPFEPAPSPDNHLDLHDIIGQSQAKRALEIAAAGGHNLLLLGPPGTGKTMLATRLTGLLPPLTD
QEALEAAAITGLLHSNALPTQWRCRAFRAPHHSASMAALIGGGSIPRPGEISLAHNGVLFLDELPEFERRVLDSLREPLE
SGEIIISRAAAKICFPAKVQLIAAMNPSPSGHYQGVHNRTPPQQILRYLAKLSGPFLDRFDLSIEVPLLPAGMLGAQKNQ
GESSATVKQRVLQARQRQMDRAGKINTQLTSQEVAEFCYLAPEDAAFLEQVLLTLGLSVRAWHHILKVARTIADLAQEKT
IQKSHLSEALSYRCMDRQLLQLHKSLM

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=25996 YPN_RS00400 WP_002228240.1 96530..98053(-) (comM) [Yersinia pestis Nepal516]
ATGTCACTGGCAACCATTCATACTCGCGCAACATTGGGCATTCAAGCCCCTCCTGTCGCGGTAGAAGTTCATATCAGCAA
TGGATTACCCGGATTGATATTGGTCGGCTTACCTGAAACAACGGTCAAAGAAGCACGGGATCGGGTTCGTAGCGCATTAA
TTAACAGCGGTTTTAATTTTCCCGCCAAGCGGATCACCGTCAGCCTGGCACCGGCAGATTTACCCAAAGAAGGCGGGCGC
TATGATCTCCCCATTGCTTTAGCCATCTTGGCCGCCTCAGAGCAGATCCCTGCGGATAAGTTAGCGCACTATGAGTTCTT
GGGTGAATTAGCCCTATCCGGCGCGTTAAGGCGCGTTAGCGGCGCAATTCCAGCAGCACTCACCTGTAGCGAAGCTAACC
GTCAGTTAATCCTTCCCACCGCTAATGGTCTTGAAATTGGTCTAATCCCACAAGGCAACTCCTGGGTCGCAGACCATTTA
TTAGCGGTATGCGGTTTCTTACAAGGTGAAAACCCCCTCGCACAGGGCCAGCCCTTCGAACCGGCCCCTTCACCGGATAA
CCACCTTGATTTACACGACATCATTGGTCAATCGCAGGCTAAACGTGCGTTAGAAATCGCGGCGGCAGGTGGTCATAACC
TGCTGTTACTCGGGCCACCAGGTACCGGTAAAACGATGCTGGCAACCCGCCTAACCGGGTTATTGCCTCCGCTGACCGAT
CAGGAGGCGTTAGAAGCAGCGGCGATCACCGGGTTGCTGCATAGCAACGCACTGCCAACACAATGGCGTTGCCGGGCCTT
TCGTGCCCCACACCATAGCGCATCGATGGCAGCGCTGATTGGCGGCGGCTCCATCCCCCGCCCCGGTGAGATATCACTGG
CCCATAACGGTGTGTTATTTCTCGATGAACTGCCTGAATTTGAACGCCGGGTACTGGATTCACTGCGCGAACCGTTGGAA
TCTGGCGAAATTATTATCTCCCGCGCGGCAGCCAAAATCTGTTTTCCAGCCAAAGTGCAACTTATCGCGGCGATGAACCC
TAGCCCCAGCGGCCACTACCAAGGCGTTCATAACCGCACACCGCCACAGCAAATTTTGCGCTATCTGGCCAAGTTGTCCG
GGCCATTTCTCGATAGATTCGATTTATCGATAGAAGTGCCATTACTGCCAGCCGGTATGCTGGGTGCGCAGAAAAATCAG
GGGGAGAGTAGCGCTACAGTCAAGCAGCGAGTGTTACAGGCCAGACAAAGGCAAATGGACCGGGCGGGGAAGATCAATAC
GCAGCTCACTAGCCAAGAGGTAGCAGAGTTTTGTTATTTAGCACCTGAGGATGCCGCGTTTCTCGAGCAGGTTTTACTGA
CACTCGGCCTGTCAGTACGTGCCTGGCACCATATTTTGAAAGTGGCGCGAACCATTGCCGATTTAGCGCAAGAAAAGACC
ATCCAAAAAAGTCATCTTTCAGAGGCGCTGAGCTATCGCTGTATGGATCGCCAGCTATTGCAGTTGCACAAAAGCCTGAT
GTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2YF57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

63.636

99.803

0.635
  comM Glaesserella parasuis strain SC1401

62.525

100

0.625
  comM Vibrio cholerae strain A1552

62.351

99.014

0.617
  comM Vibrio campbellii strain DS40M4

62.151

99.014

0.615
  comM Legionella pneumophila str. Paris

52

98.619

0.513
  comM Legionella pneumophila strain ERS1305867

52

98.619

0.513
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.774

100

0.444

Multiple sequence alignment