Detailed information NTG0025956

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HPAG1_RS00225
• Genome accession: NC_008086
• Coordinates: 39545..40522 (+)
• Length: 325 a.a.
• NCBI ID: WP_041200028.1
• Uniprot ID: -
• Organism: Helicobacter pylori HPAG1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 34545..45522

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPAG1_RS00195 (HPAG1_0032)	panD	35964..36314 (+)	351	WP_000142242.1	aspartate 1-decarboxylase	-
HPAG1_RS00200 (HPAG1_0033)	-	36325..36618 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
HPAG1_RS00205 (HPAG1_0034)	-	36618..37613 (+)	996	WP_000902477.1	PDZ domain-containing protein	-
HPAG1_RS00210 (HPAG1_0035)	comB6	37621..38676 (+)	1056	WP_000786698.1	P-type conjugative transfer protein TrbL	Machinery gene
HPAG1_RS00215 (HPAG1_0036)	comB7	38692..38805 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HPAG1_RS00220 (HPAG1_0037)	comB8	38802..39545 (+)	744	WP_000660522.1	type IV secretion system protein	Machinery gene
HPAG1_RS00225 (HPAG1_0038)	comB9	39545..40522 (+)	978	WP_041200028.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPAG1_RS00230 (HPAG1_0039)	comB10	40515..41645 (+)	1131	WP_001045873.1	DNA type IV secretion system protein ComB10	Machinery gene
HPAG1_RS00235 (HPAG1_0040)	-	41715..43127 (+)	1413	WP_000694794.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPAG1_RS00240 (HPAG1_0041)	gmd	43157..44302 (+)	1146	WP_000659787.1	GDP-mannose 4,6-dehydratase	-
HPAG1_RS00245 (HPAG1_0042)	-	44295..45227 (+)	933	WP_001002447.1	GDP-L-fucose synthase family protein	-

Sequence

Protein

• Length: 325 a.a.
• Molecular weight: 37371.09 Da
• Isoelectric Point: 9.5485

>NTDB_id=25956 HPAG1_RS00225 WP_041200028.1 39545..40522(+) (comB9) [Helicobacter pylori HPAG1]
MRKVLYALMGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFIKPQKENMAENAPKDAPTNNKPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYKALKSSQRKWYCLGIC
SKKSKLSLMPKEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIK
KGKDE

Nucleotide

• Length: 978 bp

>NTDB_id=25956 HPAG1_RS00225 WP_041200028.1 39545..40522(+) (comB9) [Helicobacter pylori HPAG1]
ATGCGTAAGGTTTTATATGCTCTCATGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
GAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACTTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATTTTAGAAAG
TAACGATCGTATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTTATAGAAGATAAAAAT
TATTATTCTAACGCTTTTATCAAGCCCCAAAAAGAAAATATGGCTGAAAATGCCCCTAAAGATGCCCCCACAAACAACAA
ACCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACTATTGGCGATAACACCAATGCGATGA
AAATCGTTAAAAAAGACATTCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGT
TCTAAAAAATCCAAGCTCTCTTTGATGCCTAAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAG
ATTAGCGCTCTCTAAATTCCCCGTGATTTATAAGGTCGTTGATGGCTATGACAACCCGGTGAATACAAGGATTGTAGGCG
ATTACATTATCGCTGAAGACGTTTCTGCTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGTATCCGTTTTATCAAA
AAGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	96.319	100	0.966