Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   HPAG1_RS00220 Genome accession   NC_008086
Coordinates   38802..39545 (+) Length   247 a.a.
NCBI ID   WP_000660522.1    Uniprot ID   -
Organism   Helicobacter pylori HPAG1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 33802..44545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPAG1_RS00195 (HPAG1_0032) panD 35964..36314 (+) 351 WP_000142242.1 aspartate 1-decarboxylase -
  HPAG1_RS00200 (HPAG1_0033) - 36325..36618 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  HPAG1_RS00205 (HPAG1_0034) - 36618..37613 (+) 996 WP_000902477.1 PDZ domain-containing protein -
  HPAG1_RS00210 (HPAG1_0035) comB6 37621..38676 (+) 1056 WP_000786698.1 P-type conjugative transfer protein TrbL Machinery gene
  HPAG1_RS00215 (HPAG1_0036) comB7 38692..38805 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  HPAG1_RS00220 (HPAG1_0037) comB8 38802..39545 (+) 744 WP_000660522.1 type IV secretion system protein Machinery gene
  HPAG1_RS00225 (HPAG1_0038) comB9 39545..40522 (+) 978 WP_041200028.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HPAG1_RS00230 (HPAG1_0039) comB10 40515..41645 (+) 1131 WP_001045873.1 DNA type IV secretion system protein ComB10 Machinery gene
  HPAG1_RS00235 (HPAG1_0040) - 41715..43127 (+) 1413 WP_000694794.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HPAG1_RS00240 (HPAG1_0041) gmd 43157..44302 (+) 1146 WP_000659787.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28698.94 Da        Isoelectric Point: 8.9546

>NTDB_id=25955 HPAG1_RS00220 WP_000660522.1 38802..39545(+) (comB8) [Helicobacter pylori HPAG1]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKITRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=25955 HPAG1_RS00220 WP_000660522.1 38802..39545(+) (comB8) [Helicobacter pylori HPAG1]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAGTTGATCTATTTAGAAGAGCTTTTAAGCCATCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTCGGCTAGAAAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATCGTGTTAATCAGTGTTTTACCCCTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGATAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAAGATTTGATTAAAACCCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCTATTGCGGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTATTGAGCTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAATCACCCGTTACAGCATTACTGAAATC
GCGCCGACTAACAGAGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.571

100

0.976

Multiple sequence alignment