Detailed information NTG0025953

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HPAG1_RS00210
• Genome accession: NC_008086
• Coordinates: 37621..38676 (+)
• Length: 351 a.a.
• NCBI ID: WP_000786698.1
• Uniprot ID: -
• Organism: Helicobacter pylori HPAG1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 32621..43676

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPAG1_RS00180 (HPAG1_0029)	-	33046..33459 (+)	414	WP_001023005.1	universal stress protein	-
HPAG1_RS00185 (HPAG1_0030)	-	33474..33749 (+)	276	WP_000784898.1	ATP-dependent Clp protease adaptor ClpS	-
HPAG1_RS00190 (HPAG1_0031)	-	33749..35974 (+)	2226	WP_001051477.1	AAA family ATPase	-
HPAG1_RS00195 (HPAG1_0032)	panD	35964..36314 (+)	351	WP_000142242.1	aspartate 1-decarboxylase	-
HPAG1_RS00200 (HPAG1_0033)	-	36325..36618 (+)	294	WP_000347917.1	YbaB/EbfC family nucleoid-associated protein	-
HPAG1_RS00205 (HPAG1_0034)	-	36618..37613 (+)	996	WP_000902477.1	PDZ domain-containing protein	-
HPAG1_RS00210 (HPAG1_0035)	comB6	37621..38676 (+)	1056	WP_000786698.1	P-type conjugative transfer protein TrbL	Machinery gene
HPAG1_RS00215 (HPAG1_0036)	comB7	38692..38805 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HPAG1_RS00220 (HPAG1_0037)	comB8	38802..39545 (+)	744	WP_000660522.1	type IV secretion system protein	Machinery gene
HPAG1_RS00225 (HPAG1_0038)	comB9	39545..40522 (+)	978	WP_041200028.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPAG1_RS00230 (HPAG1_0039)	comB10	40515..41645 (+)	1131	WP_001045873.1	DNA type IV secretion system protein ComB10	Machinery gene
HPAG1_RS00235 (HPAG1_0040)	-	41715..43127 (+)	1413	WP_000694794.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39791.76 Da
• Isoelectric Point: 8.5786

>NTDB_id=25953 HPAG1_RS00210 WP_000786698.1 37621..38676(+) (comB6) [Helicobacter pylori HPAG1]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSVSALTEALLFVGFFALFNY
ALKNPLHFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSASMNESVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=25953 HPAG1_RS00210 WP_000786698.1 37621..38676(+) (comB6) [Helicobacter pylori HPAG1]
ATGAAAAATGACGCTTATGAAATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCACAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTACAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGTTAGCGCGCTAACAGAAGCGTTATTATTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCTTTGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAATATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCGTGTTTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTGATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTCTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATACATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTGCTTCTATGAATGAAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (43-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.721	100	0.977